ggKbase home page

scnpilot_p_inoc_scaffold_125_curated

Search features with annotation key words

Displaying items 1-30 of 250 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_125_curated_1
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

682..1716
DNA (1035bp) protein (345aa)
alanine racemase (EC:5.1.1.1); K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
Transcriptional regulator, LacI family id=2984508 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_2
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1736..2278)
DNA (543bp) protein (181aa)
Peptidoglycan-binding domain 1 protein id=2984500 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_3
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2926..5409
DNA (2484bp) protein (828aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RXA8_9RHOB
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EEW26633.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
scnpilot_p_inoc_scaffold_125_curated_4
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5428..6051)
DNA (624bp) protein (208aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Rhodobacter sp. SW2 RepID=C8RXA7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO54315.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
enoyl-CoA hydratase/isomerase
scnpilot_p_inoc_scaffold_125_curated_5
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6048..6800)
DNA (753bp) protein (251aa)
ucpA; oxidoreductase UcpA (EC:1.-.-.-)
20-beta-hydroxysteroid dehydrogenase, putative n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SQH6_9RHOB
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_125_curated_6
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6918..8429
DNA (1512bp) protein (504aa)
Putative uncharacterized protein id=2984423 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_7
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8496..10028
DNA (1533bp) protein (511aa)
pepQ1; dipeptidase PepE (EC:3.4.13.9)
Peptidase M24 id=2634419 bin=GWF1_Rhodobacteraceae_65_7 species=Hoeflea phototrophica genus=Hoeflea taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_8
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10085..11425
DNA (1341bp) protein (447aa)
Peptidase U62 modulator of DNA gyrase id=2634422 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
C69 family peptidase; K03592 PmbA protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_9
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11412..12194
DNA (783bp) protein (261aa)
Inositol-phosphate phosphatase {ECO:0000313|EMBL:EEW26627.1}; EC=3.1.3.25 {ECO:0000313|EMBL:EEW26627.1};; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
inositol-phosphate phosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol-phosphate phosphatase n=1 Tax=Rhodobacter sp. SW2 RepID=C8RXA2_9RHOB
scnpilot_p_inoc_scaffold_125_curated_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12187..13074
DNA (888bp) protein (296aa)
Putative uncharacterized protein id=2634428 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_11
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13135..13461)
DNA (327bp) protein (109aa)
Thioredoxin n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EKC4_9RHOB
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
thioredoxin; K03671 thioredoxin 1
scnpilot_p_inoc_scaffold_125_curated_12
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13550..14719)
DNA (1170bp) protein (390aa)
HI0933 family protein id=2634438 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein; K07007
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_13
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14716..16041)
DNA (1326bp) protein (442aa)
MscS Mechanosensitive ion channel n=1 Tax=Rhodobacter sp. SW2 RepID=C8RW60_9RHOB
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:EEW26803.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
mechanosensitive ion channel family protein
scnpilot_p_inoc_scaffold_125_curated_14
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16149..16868)
DNA (720bp) protein (240aa)
Response regulator receiver protein id=2634442 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
response regulator receiver protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_15
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16825..17103)
DNA (279bp) protein (93aa)
Putative uncharacterized protein id=2634447 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sphaeroides genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_16
unknown

Not on your lists

17305..17484
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_125_curated_17
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17488..18126
DNA (639bp) protein (213aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4]
Ribonuclease HII id=2634451 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_18
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18214..19338
DNA (1125bp) protein (375aa)
site-specific DNA-methyltransferase (EC:2.1.1.72); K13581 modification methylase [EC:2.1.1.72]
DNA methylase N-4/N-6 domain protein id=2634453 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_19
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19869..20819)
DNA (951bp) protein (317aa)
Dipeptidylaminopeptidase/acylaminoacyl-peptidase-like protein n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WJJ0_ACTMD
dipeptidylaminopeptidase/acylaminoacyl-peptidase-like protein; K06889
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_20
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20821..21447)
DNA (627bp) protein (209aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Rhodobacter sp. SW2 RepID=C8RWP3_9RHOB
HAD-superfamily hydrolase
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_21
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21493..23382)
DNA (1890bp) protein (630aa)
5'-nucleotidase domain-containing protein; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
5'-Nucleotidase domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RWP2_9RHOB
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_22
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23597..24547
DNA (951bp) protein (317aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22]
NUDIX hydrolase n=1 Tax=Rhodobacter sp. SW2 RepID=C8RWP1_9RHOB
NUDIX hydrolase {ECO:0000313|EMBL:EEW26984.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
scnpilot_p_inoc_scaffold_125_curated_23
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24611..25078
DNA (468bp) protein (156aa)
Putative uncharacterized protein id=2604543 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_24
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25115..25945)
DNA (831bp) protein (277aa)
Prephenate dehydratase {ECO:0000313|EMBL:ESW59277.1}; EC=4.2.1.51 {ECO:0000313|EMBL:ESW59277.1};; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
prephenate dehydratase (EC:4.2.1.51); K04518 prephenate dehydratase [EC:4.2.1.51]
Prephenate dehydratase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGK2_9RHOB
scnpilot_p_inoc_scaffold_125_curated_25
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26079..26606
DNA (528bp) protein (176aa)
Cytochrome c, class I id=2604532 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
cytochrome c, class I; K08738 cytochrome c
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_26
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26781..28688
DNA (1908bp) protein (636aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NLY5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFI30548.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
extracellular solute-binding protein; K13893 microcin C transport system substrate-binding protein
scnpilot_p_inoc_scaffold_125_curated_27
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28690..29856
DNA (1167bp) protein (389aa)
Binding-protein-dependent transport systems inner membrane component id=2604528 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EEW26979.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
binding-protein-dependent transport system inner membrane protein; K13894 microcin C transport system permease protein
scnpilot_p_inoc_scaffold_125_curated_28
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29859..30965
DNA (1107bp) protein (369aa)
Binding-protein-dependent transport systems inner membrane component id=2604525 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
binding-protein-dependent transport systems inner membrane component; K13895 microcin C transport system permease protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_29
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30962..32545
DNA (1584bp) protein (528aa)
ABC transporter related protein id=2604523 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ABC transporter-like protein; K13896 microcin C transport system ATP-binding protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_125_curated_30
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32557..33783
DNA (1227bp) protein (409aa)
Glycosyl transferase group 1 id=2604519 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
group 1 glycosyl transferase
Tax=GWF1_Rhodobacteraceae_65_7_curated
Displaying items 1-30 of 250 in total

View Taxonomy