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scnpilot_p_inoc_scaffold_613_curated

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_613_curated_1
Roseibacterium elongatum, Roseibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..129)
DNA (129bp) protein (43aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1294273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibacterium.;" source="Roseibacterium elongatum DSM 19469.;"
nucleotidyl transferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UDP-glucose pyrophosphorylase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4E4_PARDP
scnpilot_p_inoc_scaffold_613_curated_2
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(339..2177)
DNA (1839bp) protein (613aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Dihydroxy-acid dehydratase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=ILVD_PARDP rbh
scnpilot_p_inoc_scaffold_613_curated_3
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2507..3055)
DNA (549bp) protein (183aa)
DNA-binding protein, putative n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QB69_9RHOB
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:KIC50820.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp. ANG-S1.;"
XRE family transcriptional regulator
scnpilot_p_inoc_scaffold_613_curated_4
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3596..5422)
DNA (1827bp) protein (609aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P4_9RHOB
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:EEW24992.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
relaxase/mobilization nuclease domain-containing protein
scnpilot_p_inoc_scaffold_613_curated_5
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5415..5882)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P5_9RHOB
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_613_curated_6
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6502..7227
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P6_9RHOB
virulence VirC1 protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_613_curated_7
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7227..7907
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW24995.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
scnpilot_p_inoc_scaffold_613_curated_8
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7904..8125
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW24996.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
scnpilot_p_inoc_scaffold_613_curated_9
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8244..9659)
DNA (1416bp) protein (472aa)
noeK; phosphoglucomutase/phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8]
NoeK protein {ECO:0000313|EMBL:ABA81527.1}; EC=5.4.2.8 {ECO:0000313|EMBL:ABA81527.1};; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
Phosphoglucomutase/phosphomannomutase n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA7_RHOS4
scnpilot_p_inoc_scaffold_613_curated_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9728..10594)
DNA (867bp) protein (289aa)
SMP-30/Gluconolaconase/LRE domain protein id=2849102 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
senescence marker protein-30
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_613_curated_11
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10638..11405)
DNA (768bp) protein (256aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WNH5_RHOS5
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABP68939.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
scnpilot_p_inoc_scaffold_613_curated_12
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11580..13598
DNA (2019bp) protein (673aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E648_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDM29786.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
Chromosome segregation ATPase-like protein
scnpilot_p_inoc_scaffold_613_curated_13
Legionella longbeachae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13608..15731
DNA (2124bp) protein (708aa)
Uncharacterized protein n=2 Tax=Legionella longbeachae RepID=D3HMC3_LEGLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBJ13612.1}; TaxID=661367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella longbeachae serogroup 1 (strain NSW150).;"
scnpilot_p_inoc_scaffold_613_curated_14
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15728..16453
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E646_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDM29784.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
lipopolysaccharide core biosynthesis protein
scnpilot_p_inoc_scaffold_613_curated_15
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16739..17605
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E643_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDM29781.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
glycosyl transferase family 2
scnpilot_p_inoc_scaffold_613_curated_16
Paracoccus sp. 5503, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17544..18248
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P218_9RHOB
Acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:KGJ19405.1}; TaxID=1525717 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 5503.;"
acylneuraminate cytidylyltransferase
scnpilot_p_inoc_scaffold_613_curated_17
Paracoccus sp. 5503, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18258..19202
DNA (945bp) protein (315aa)
Phosphoglycerate dehydrogenase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P217_9RHOB
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KGJ19406.1}; TaxID=1525717 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 5503.;"
D-isomer specific 2-hydroxyacid dehydrogenase
scnpilot_p_inoc_scaffold_613_curated_18
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19202..22198
DNA (2997bp) protein (999aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRT1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR21652.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
glycosyl transferase family 2
scnpilot_p_inoc_scaffold_613_curated_19
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22451..23518
DNA (1068bp) protein (356aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=1 Tax=Roseovarius sp. 217 RepID=A3W0V9_9RHOB
scnpilot_p_inoc_scaffold_613_curated_20
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23691..24491
DNA (801bp) protein (267aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ15712.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
scnpilot_p_inoc_scaffold_613_curated_21
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24488..25456
DNA (969bp) protein (323aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
wcaG; putative nucleotide di-P-sugar epimerase or dehydratase (EC:1.1.1.271); K02377 GDP-L-fucose synthase [EC:1.1.1.271]
GDP-L-fucose synthase n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CP03_9RHOB
scnpilot_p_inoc_scaffold_613_curated_22
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25477..26922
DNA (1446bp) protein (482aa)
xanB; mannose-1-phosphate guanylyltransferase (EC:2.7.7.22); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
Mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3IZM1_RHOS4
Tax=BJP_08E140C01_Roseovarius_63_250
scnpilot_p_inoc_scaffold_613_curated_23
Pluralibacter gergoviae, Pluralibacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27012..28469
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Leishmania major RepID=E9ACH4_LEIMA
hypothetical protein
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=61647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pluralibacter.;" source="Pluralibacter gergoviae (Enterobacter gergoviae).;"
scnpilot_p_inoc_scaffold_613_curated_24
Ruegeria sp. PR1b, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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28500..29036
DNA (537bp) protein (179aa)
RB116 n=1 Tax=Ruegeria sp. PR1b RepID=Q8KWC6_9RHOB
RB116 {ECO:0000313|EMBL:AAN05137.1}; TaxID=185588 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. PR1b.;"
scnpilot_p_inoc_scaffold_613_curated_25
Ruegeria sp. PR1b, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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29033..30004
DNA (972bp) protein (324aa)
RB117 n=1 Tax=Ruegeria sp. PR1b RepID=Q8KWC5_9RHOB
RB117 {ECO:0000313|EMBL:AAN05138.1}; TaxID=185588 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. PR1b.;"
hypothetical protein
scnpilot_p_inoc_scaffold_613_curated_26
unknown

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30001..31122
DNA (1122bp) protein (374aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_613_curated_27
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31119..32153
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W0W3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ETX26991.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
hypothetical protein
scnpilot_p_inoc_scaffold_613_curated_28
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(32214..37073)
DNA (4860bp) protein (1620aa)
Hemolysin-type calcium-binding region n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R560_ISOPI
Hemolysin-type calcium-binding region {ECO:0000313|EMBL:ADV63813.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
hemolysin-type calcium-binding protein
scnpilot_p_inoc_scaffold_613_curated_29
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37243..38277)
DNA (1035bp) protein (345aa)
ParB-like nuclease n=1 Tax=Citreicella sp. 357 RepID=I1AR32_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ETX26999.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
ParB-like nuclease
scnpilot_p_inoc_scaffold_613_curated_30

Not on your lists

comp(38385..39779)
DNA (1395bp) protein (465aa)
ATPase, ParA type n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KX94_RHOSK
Uncharacterized protein {ECO:0000313|EMBL:KKM83256.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ATPase, ParA type
Displaying items 1-30 of 45 in total

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