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SCNpilot_cont_750_bf_scaffold_911_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_911_curated_1
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..71)
DNA (69bp) protein (23aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000305D2B2
Transposase {ECO:0000313|EMBL:KDM68388.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
transposase
SCNpilot_cont_750_bf_scaffold_911_curated_2
unknown

Not on your lists

comp(41..1630)
DNA (1590bp) protein (530aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_911_curated_3
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1644..2000)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003065C67
Transposase {ECO:0000313|EMBL:KDM68387.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
transposase
SCNpilot_cont_750_bf_scaffold_911_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1997..2386)
DNA (390bp) protein (130aa)
Transposase number 1 for insertion sequence n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X449_RHIFR
Transposase {ECO:0000313|EMBL:CDN96530.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
transposase number 1 for insertion sequence
SCNpilot_cont_750_bf_scaffold_911_curated_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2424..2957)
DNA (534bp) protein (178aa)
UPI0003CF5C54 related cluster n=1 Tax=unknown RepID=UPI0003CF5C54
Uncharacterized protein {ECO:0000313|EMBL:KGM34098.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_911_curated_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3113..3553)
DNA (441bp) protein (147aa)
Integral membrane protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HJV6_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_750_bf_scaffold_911_curated_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3566..3895)
DNA (330bp) protein (110aa)
Multicopper oxidase type 2 n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QHK8_METSZ
Copper oxidase {ECO:0000313|EMBL:KGM32981.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Multicopper oxidase type 2
SCNpilot_cont_750_bf_scaffold_911_curated_8
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4002..4334
DNA (333bp) protein (111aa)
Transposase IS3/IS911 family protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TRB5_ACIAC
transposase IS3/IS911 family protein; K07483 transposase
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ABM33503.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_cont_750_bf_scaffold_911_curated_9
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4331..5236
DNA (906bp) protein (302aa)
Integrase catalytic region n=7 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KFV9_METEX
Integrase catalytic region {ECO:0000313|EMBL:EHP93602.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
integrase catalytic region
SCNpilot_cont_750_bf_scaffold_911_curated_10

Not on your lists

comp(5200..5766)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NR01_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN52337.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_750_bf_scaffold_911_curated_11
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5798..6517)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2JTX2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFE34376.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_911_curated_12
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6720..6938
DNA (219bp) protein (73aa)
Dodecin, Flavin-binding protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QTT3_9RHIZ
Dodecin, Flavin-binding protein {ECO:0000313|EMBL:ESR23182.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein; K09165 hypothetical protein
SCNpilot_cont_750_bf_scaffold_911_curated_13
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7005..7796
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLE7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KEZ79118.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_911_curated_14
Komagataeibacter europaeus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7655..8611)
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S300_9PROT
Transposase {ECO:0000313|EMBL:GAN96470.1}; TaxID=1234669 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter europaeus NBRC 3261.;"
putative transposase for insertion sequence element
SCNpilot_cont_750_bf_scaffold_911_curated_15
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(8963..10321)
DNA (1359bp) protein (453aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:KIJ72686.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQS4_9PROT
histidine kinase
SCNpilot_cont_750_bf_scaffold_911_curated_16
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10327..11109)
DNA (783bp) protein (261aa)
Response regulator receiver domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQS3_9PROT
Response regulator receiver domain protein {ECO:0000313|EMBL:EFH10323.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
two-component response regulator
SCNpilot_cont_750_bf_scaffold_911_curated_17
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11116..11919)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI0003617AB3
Copper resistance B {ECO:0000313|EMBL:EKS72722.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
copper resistance B
SCNpilot_cont_750_bf_scaffold_911_curated_18
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11916..13580)
DNA (1665bp) protein (555aa)
Copper resistance protein A n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF9_9PROT
Copper resistance protein A {ECO:0000313|EMBL:EKE67954.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
copA; copper resistance protein A
SCNpilot_cont_750_bf_scaffold_911_curated_19
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(13630..14166)
DNA (537bp) protein (179aa)
Copper-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2ICG3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIJ72693.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_911_curated_20
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14562..15584)
DNA (1023bp) protein (341aa)
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
Fe(3+) ions import ATP-binding protein fbpC n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE32_9BURK
ABC-type spermidine/putrescine transport system, ATPase component
SCNpilot_cont_750_bf_scaffold_911_curated_21
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15581..17086)
DNA (1506bp) protein (502aa)
UPI0003D050AE related cluster n=1 Tax=unknown RepID=UPI0003D050AE
Fe(3+)-transport system permease protein SfuB {ECO:0000313|EMBL:CDX34066.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein
SCNpilot_cont_750_bf_scaffold_911_curated_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17257..18261)
DNA (1005bp) protein (335aa)
Fe(3+) ABC transporter, periplasmic substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHU1_RHITR
Fe(3+) ABC transporter, periplasmic substrate-binding protein
Fe(3+) ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:AGB69610.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_750_bf_scaffold_911_curated_23
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18900..19499
DNA (600bp) protein (200aa)
Cobalt transporter n=1 Tax=Asaia sp. SF2.1 RepID=V8A5P8_9PROT
Cation efflux protein {ECO:0000313|EMBL:GAJ29813.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
putative transporter
SCNpilot_cont_750_bf_scaffold_911_curated_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19805..20515
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAD17
Tiorf70 protein {ECO:0000313|EMBL:BAA87695.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_911_curated_25
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20581..20847
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8I9Z3_METNO
hypothetical protein; K07807 hypothetical protein NreA
Uncharacterized protein {ECO:0000313|EMBL:ACL57221.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_750_bf_scaffold_911_curated_26
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20859..21716
DNA (858bp) protein (286aa)
UPI0003CF886B related cluster n=1 Tax=unknown RepID=UPI0003CF886B
Cobalt transporter {ECO:0000313|EMBL:ESY76890.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
transmembrane efflux protein
Displaying 26 items

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