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SCNpilot_cont_750_bf_scaffold_710_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_710_curated_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(387..1214)
DNA (828bp) protein (276aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; EC=3.1.4.17 {ECO:0000256|HAMAP-Rule:MF_00905};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
metallophosphatase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037F9C6B
metallophosphoesterase
SCNpilot_cont_750_bf_scaffold_710_curated_2
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1228..2547)
DNA (1320bp) protein (440aa)
Extracellular solute-binding protein family 1 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IG32_METNO
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDB04533.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
family 1 extracellular solute-binding protein; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein
SCNpilot_cont_750_bf_scaffold_710_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2564..3388)
DNA (825bp) protein (275aa)
ABC transporter permease n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000381A2E3
binding-protein-dependent transport system inner membrane protein; K05815 sn-glycerol 3-phosphate transport system permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_750_bf_scaffold_710_curated_4
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3378..4310)
DNA (933bp) protein (311aa)
Permease component of ABC-type sugar transporter n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I5Q0_9BRAD
Sugar ABC transporter permease {ECO:0000313|EMBL:KDB04535.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
ABC transporter permease; K05814 sn-glycerol 3-phosphate transport system permease protein
SCNpilot_cont_750_bf_scaffold_710_curated_5
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4480..6336)
DNA (1857bp) protein (619aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:EFH12308.1}; EC=2.7.3.9 {ECO:0000313|EMBL:EFH12308.1};; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
phosphoenolpyruvate-protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036F613D
SCNpilot_cont_750_bf_scaffold_710_curated_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6323..6643)
DNA (321bp) protein (107aa)
Phosphocarrier protein HPr n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV57_GRABC
Phosphotransferase system phosphocarrier protein HPr {ECO:0000313|EMBL:GAN77981.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
phosphocarrier protein HPr; K11189 phosphocarrier protein
SCNpilot_cont_750_bf_scaffold_710_curated_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6646..7074)
DNA (429bp) protein (143aa)
PTS system, IIA component (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system, IIA component n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV58_GRABC
Phosphotransferase system permease nitrogen regulatory IIA protein {ECO:0000313|EMBL:GAN77980.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_bf_scaffold_710_curated_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7161..8183)
DNA (1023bp) protein (341aa)
glmZ(sRNA)-inactivating NTPase n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237E292
Nucleotide-binding protein Asru_0549_08 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ATPase; K06958 UPF0042 nucleotide-binding protein
SCNpilot_cont_750_bf_scaffold_710_curated_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8180..8614)
DNA (435bp) protein (145aa)
HPr kinase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
Hpr(Ser) kinase/phosphatase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FVP0_ACICJ
Catabolite repression sensor HPr kinase {ECO:0000313|EMBL:GAN77978.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_bf_scaffold_710_curated_10
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8754..9683
DNA (930bp) protein (310aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19]
Pyridoxal-phosphate dependent protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6F2_9PROT
Pyridoxal-phosphate dependent protein {ECO:0000313|EMBL:EHL97109.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_750_bf_scaffold_710_curated_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9680..10477
DNA (798bp) protein (266aa)
enoyl-CoA hydratase (EC:4.2.1.17); K13766 methylglutaconyl-CoA hydratase [EC:4.2.1.18]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003754FFC
Allantoate amidohydrolase {ECO:0000313|EMBL:EDP65622.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_cont_750_bf_scaffold_710_curated_12
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10503..11009
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FDADE6
MOSC domain-containing protein
MOSC domain containing protein {ECO:0000313|EMBL:ABZ70589.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_750_bf_scaffold_710_curated_13
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11272..12084)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRU0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP64621.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_710_curated_14
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12199..13689
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037C9189
Uncharacterized protein {ECO:0000313|EMBL:EWY42846.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
major facilitator transporter
SCNpilot_cont_750_bf_scaffold_710_curated_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13756..14649)
DNA (894bp) protein (298aa)
Alpha/beta hydrolase fold protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XX93_9RHIZ
alpha/beta hydrolase fold protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_750_bf_scaffold_710_curated_16
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14658..15341)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035C45B6
Metallophosphoesterase {ECO:0000313|EMBL:GAN53799.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
putative ICC-like phosphoesterases
SCNpilot_cont_750_bf_scaffold_710_curated_17
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15419..16330)
DNA (912bp) protein (304aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Aminotransferase class IV {ECO:0000313|EMBL:KFN51584.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Putative aminotransferase id=2598357 bin=GWF1_Xanthomonadales_69_6 species=Rubrivivax gelatinosus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_cont_750_bf_scaffold_710_curated_18
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16384..17565)
DNA (1182bp) protein (394aa)
mandelate racemase/muconate lactonizing enzyme, N-terminal domain-containing protein 1 (EC:4.2.1.-)
Mandelate racemase/muconate lactonizing enzyme family protein n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WYM8_9BURK
Mandelate racemase/muconate lactonizing enzyme family protein {ECO:0000313|EMBL:EON12367.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_750_bf_scaffold_710_curated_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17585..18442
DNA (858bp) protein (286aa)
Amino acid ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JMT3_AGRRK
amino acid ABC transporter
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ92113.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_cont_750_bf_scaffold_710_curated_20
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18579..18950)
DNA (372bp) protein (124aa)
6-O-methylguanine DNA methyltransferase, DNA binding domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZK5_9PROT
6-O-methylguanine DNA methyltransferase, DNA binding domain protein {ECO:0000313|EMBL:EHM01523.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
putative methylated DNA-protein cysteine methyltransferase
SCNpilot_cont_750_bf_scaffold_710_curated_21
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18953..21382)
DNA (2430bp) protein (810aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000381F1D6
DEAD/H associated domain protein {ECO:0000313|EMBL:ABQ30819.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_750_bf_scaffold_710_curated_22
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21706..22749
DNA (1044bp) protein (348aa)
UPI0003CF9ABB related cluster n=1 Tax=unknown RepID=UPI0003CF9ABB
Fatty acid hydroxylase {ECO:0000313|EMBL:ESY73322.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
sterol desaturase
SCNpilot_cont_750_bf_scaffold_710_curated_23
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22809..24041
DNA (1233bp) protein (411aa)
Putative oxidoreductase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EAY4_BRASB
oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:ABQ33328.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_750_bf_scaffold_710_curated_24
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24097..24957
DNA (861bp) protein (287aa)
Transcriptional regulator, AraC family n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FTS7_ACICJ
AraC protein, arabinose-binding/dimerisation
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABQ29009.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_750_bf_scaffold_710_curated_25
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24986..25393
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSV3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM27045.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_710_curated_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25429..27270)
DNA (1842bp) protein (614aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Periplasmic sensor hybrid histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216A8_RHOPB
periplasmic sensor hybrid histidine kinase
Displaying 26 items

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