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SCNpilot_cont_750_bf_scaffold_705_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_705_curated_1

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2..358
DNA (357bp) protein (119aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YDN2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD31258.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_705_curated_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(372..1841)
DNA (1470bp) protein (490aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JEK3_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI06587.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_705_curated_3
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1882..2874)
DNA (993bp) protein (331aa)
integrase n=1 Tax=Leucothrix mucor RepID=UPI0003B3DAA0
int; putative site specific integrase
Putative site specific integrase {ECO:0000313|EMBL:CAI10560.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_cont_750_bf_scaffold_705_curated_4
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2979..3665
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WGT8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK81905.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
transporter; K07238 zinc transporter, ZIP family
SCNpilot_cont_750_bf_scaffold_705_curated_5
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3709..4407)
DNA (699bp) protein (233aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS39348.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
SCNpilot_cont_750_bf_scaffold_705_curated_6
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4859..7993)
DNA (3135bp) protein (1045aa)
Heavy metal efflux pump, CzcA family n=1 Tax=gamma proteobacterium HdN1 RepID=E1VMD2_9GAMM
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:KIL99092.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
Heavy metal efflux pump, CzcA family; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_750_bf_scaffold_705_curated_7
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8009..9142)
DNA (1134bp) protein (378aa)
Secretion protein HlyD n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CS4_DECAR
Cobalt/zinc/cadmium efflux RND transporter membrane fusion protein CzcB family {ECO:0000313|EMBL:KIL99091.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_750_bf_scaffold_705_curated_8
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9139..9723)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003629B71
Heavy metal RND efflux outer membrane protein CzcC family {ECO:0000313|EMBL:KIL99090.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
Outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
SCNpilot_cont_750_bf_scaffold_705_curated_9
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11307..11660)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RIM8_PHEZH
hypothetical protein; K09981 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG80203.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_750_bf_scaffold_705_curated_10
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(11681..13477)
DNA (1797bp) protein (599aa)
Cadmium-exporting ATPase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZR4_9PROT
ATPase {ECO:0000313|EMBL:KIJ72530.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
zntA; lead, cadmium, zinc and mercury-transporting ATPase
SCNpilot_cont_750_bf_scaffold_705_curated_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13997..14449
DNA (453bp) protein (151aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7P2_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE78904.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
zntR; MerR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_705_curated_12
unknown

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comp(14628..14963)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_13
unknown

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comp(14960..15175)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_14
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15188..15838)
DNA (651bp) protein (217aa)
DNA methylase N-4/N-6 domain-containing protein; K07319 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
DNA methylase N-4/N-6 domain protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZFW9_GLUDA
SCNpilot_cont_750_bf_scaffold_705_curated_15
unknown

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comp(16179..16874)
DNA (696bp) protein (232aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_16
unknown

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comp(16943..17176)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_17
unknown

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comp(17238..17459)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_18
unknown

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comp(17596..18510)
DNA (915bp) protein (305aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_19
unknown

Not on your lists

19417..19575
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_20
unknown

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20678..21157
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_21
unknown

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21176..21469
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_22
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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21631..23025
DNA (1395bp) protein (465aa)
Coupling protein VirD4, ATPase required for T-DNA transfer n=1 Tax=Rhodovulum sp. PH10 RepID=J6LC28_9RHOB
Coupling protein VirD4, ATPase required for T-DNA transfer {ECO:0000313|EMBL:EJW10838.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_750_bf_scaffold_705_curated_23
unknown

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23035..23520
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_24
unknown

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comp(23505..23807)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_25
unknown

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comp(23819..24199)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_26
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24264..26357)
DNA (2094bp) protein (698aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQ11_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KCZ96925.1}; Flags: Fragment;; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
SCNpilot_cont_750_bf_scaffold_705_curated_27
unknown

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comp(26341..26856)
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_705_curated_28
unknown

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comp(27640..27729)
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 28 items

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