ggKbase home page

SCNpilot_cont_750_bf_scaffold_1014_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1014_curated_1
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(207..1517)
DNA (1311bp) protein (437aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
Nucleotide sugar dehydrogenase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZET1_GLUDA
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:GAN76062.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_bf_scaffold_1014_curated_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1680..2699
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTK5_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30750.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
AraC family transcriptional regulator; K04033 AraC family transcriptional regulator, ethanolamine operon transcriptional activator
SCNpilot_cont_750_bf_scaffold_1014_curated_3
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2753..3181)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Acetobacter aceti RepID=UPI000226056C
Uncharacterized protein {ECO:0000313|EMBL:GAN56334.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1014_curated_4
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3181..4539)
DNA (1359bp) protein (453aa)
fliI; flagellum-specific ATP synthase; K02412 flagellum-specific ATP synthase [EC:3.6.3.14]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000366E302
Secretion system type III flagellum-specific ATPase {ECO:0000313|EMBL:GAN56333.1}; TaxID=887700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti NBRC 14818.;"
SCNpilot_cont_750_bf_scaffold_1014_curated_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4707..5441
DNA (735bp) protein (245aa)
Cell cycle response regulator CtrA n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6Z4_9PROT
Two component transcriptional regulator cell cycle CtrA {ECO:0000313|EMBL:GAN78259.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
cell cycle transcriptional regulator CtrA
SCNpilot_cont_750_bf_scaffold_1014_curated_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5491..6771)
DNA (1281bp) protein (427aa)
Chloride channel protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQZ9_GRABC
Chloride channel protein {ECO:0000313|EMBL:GAN78368.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
chloride channel protein
SCNpilot_cont_750_bf_scaffold_1014_curated_7
unknown

Not on your lists

comp(7398..7586)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1014_curated_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7862..9220)
DNA (1359bp) protein (453aa)
allantoinase protein; K01466 allantoinase [EC:3.5.2.5]
Amidohydrolase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A434_9PROT
Amidohydrolase family protein {ECO:0000313|EMBL:EHL98429.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_750_bf_scaffold_1014_curated_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9379..10878
DNA (1500bp) protein (500aa)
2-methylcitrate dehydratase (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79]
2-methylcitrate dehydratase n=3 Tax=Acidiphilium RepID=A5FW60_ACICJ
2-methylcitrate dehydratase {ECO:0000313|EMBL:GAN77492.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_bf_scaffold_1014_curated_10
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10892..12046
DNA (1155bp) protein (385aa)
prpC; methylcitrate synthase (EC:2.2.1.7); K01659 2-methylcitrate synthase [EC:2.3.3.5]
Citrate synthase n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CX82_9BURK
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
SCNpilot_cont_750_bf_scaffold_1014_curated_11
unknown

Not on your lists

12296..12646
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1014_curated_12
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12594..13250)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00037D3D32
Uncharacterized protein {ECO:0000313|EMBL:EGO95289.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_750_bf_scaffold_1014_curated_13
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13490..14122)
DNA (633bp) protein (211aa)
Putative aldolase {ECO:0000313|EMBL:EFH12408.1}; EC=4.1.2.17 {ECO:0000313|EMBL:EFH12408.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035DF56E
putative aldolase
SCNpilot_cont_750_bf_scaffold_1014_curated_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14124..15389)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000360672E
YgbK domain protein {ECO:0000313|EMBL:EHM02096.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
Hrp-dependent type III effector protein
SCNpilot_cont_750_bf_scaffold_1014_curated_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15555..16604)
DNA (1050bp) protein (350aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EFH09957.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFH09957.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Glycosyltransferase, group 1 family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRW7_9PROT
putative glycosyltransferase
SCNpilot_cont_750_bf_scaffold_1014_curated_16
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16673..17941)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DK65_BRAJP
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN76532.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1014_curated_17
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18909..20855
DNA (1947bp) protein (649aa)
Putative Ser protein kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLY4_9RHIZ
Serine protein kinase PrkA {ECO:0000313|EMBL:GAN77922.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative serine protein kinase PrkA; K07180 serine protein kinase
SCNpilot_cont_750_bf_scaffold_1014_curated_18
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20947..22260
DNA (1314bp) protein (438aa)
UPF0229 protein RC1_3553 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IX82_RHOCS
UPF0229 protein Asru_0521_03 {ECO:0000256|HAMAP-Rule:MF_01232}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein; K09786 hypothetical protein
SCNpilot_cont_750_bf_scaffold_1014_curated_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22257..23126
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLY2_9RHIZ
Stage V sporulation protein R/SpoVR {ECO:0000313|EMBL:GAN77924.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SpoVR family protein
Displaying 19 items

View Taxonomy