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SCNpilot_cont_750_bf_scaffold_1257_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1257_curated_1
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..593
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Burkholderia bryophila RepID=UPI00037030BC
Uncharacterized protein {ECO:0000313|EMBL:KKB64387.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
SCNpilot_cont_750_bf_scaffold_1257_curated_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(777..1505)
DNA (729bp) protein (243aa)
Transposase family protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QR83_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48985.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
transposase, IS204/IS1001/IS1096/IS1165
SCNpilot_cont_750_bf_scaffold_1257_curated_3
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1546..2712)
DNA (1167bp) protein (389aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, centralregion:Acyl-CoA dehydrogenase, N-terminal n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZG8_9RHOB
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, centralregion:Acyl-CoA dehydrogenase, N-terminal {ECO:0000313|EMBL:EAQ02449.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
SCNpilot_cont_750_bf_scaffold_1257_curated_4
unknown

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comp(2792..2935)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1257_curated_5
bacterium YEK0313, Bacteria

Not on your lists

comp(4051..4974)
DNA (924bp) protein (308aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13C11_RHOPS
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEJ14085.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator
SCNpilot_cont_750_bf_scaffold_1257_curated_6
bacterium YEK0313, Bacteria

Not on your lists

comp(5045..5911)
DNA (867bp) protein (289aa)
Possible transport system permease protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N9W8_RHOPA
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ14086.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid ABC transporter inner membrane protein
SCNpilot_cont_750_bf_scaffold_1257_curated_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5914..6618)
DNA (705bp) protein (235aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q652_RHOPT
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACF00129.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_750_bf_scaffold_1257_curated_8
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7311..9410)
DNA (2100bp) protein (700aa)
Putative pimeloyl-CoA synthetase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZG5_9RHOB
Putative pimeloyl-CoA synthetase {ECO:0000313|EMBL:EAQ02446.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
pimeloyl-CoA synthetase rbh
SCNpilot_cont_750_bf_scaffold_1257_curated_9
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9531..10337)
DNA (807bp) protein (269aa)
enoyl-CoA hydratase (EC:4.2.1.17); K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] rbh
Probable enoyl-CoA hydratase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZG0_9RHOB
Probable enoyl-CoA hydratase {ECO:0000313|EMBL:EAQ02441.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
SCNpilot_cont_750_bf_scaffold_1257_curated_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10541..10963)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRD0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF86560.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein; K07068
SCNpilot_cont_750_bf_scaffold_1257_curated_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10966..12114)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IUI5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF86559.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
putative nonspecific lipid-transfer protein
SCNpilot_cont_750_bf_scaffold_1257_curated_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12175..14001)
DNA (1827bp) protein (609aa)
UPI0003CE8C6E related cluster n=1 Tax=unknown RepID=UPI0003CE8C6E
flavin-containing monooxygenase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_750_bf_scaffold_1257_curated_13
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14059..15123)
DNA (1065bp) protein (355aa)
Putative zinc-binding dehydrogenase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QQJ8_BORBO
Uncharacterized protein {ECO:0000313|EMBL:ETW98785.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
zinc-binding dehydrogenase
SCNpilot_cont_750_bf_scaffold_1257_curated_14
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15137..16678)
DNA (1542bp) protein (514aa)
high-affinity branched-chain amino acid ABC transporter ATP-binding protein (EC:3.6.3.-)
High-affinity branched-chain amino acid ABC transporter, ATP binding protein (Modular protein) {ECO:0000313|EMBL:CCH85831.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCH85831.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
High-affinity branched-chain amino acid ABC transporter, ATP binding protein (Modular protein) n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4ER18_MODMB
SCNpilot_cont_750_bf_scaffold_1257_curated_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16675..17628)
DNA (954bp) protein (318aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Meiothermus timidus RepID=UPI00037058B2
chain amino acid ABC transporter inner membrane subunit; K01998 branched-chain amino acid transport system permease protein
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_cont_750_bf_scaffold_1257_curated_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17625..18497)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQZ2_AFIFE
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_cont_750_bf_scaffold_1257_curated_17
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19730..21007)
DNA (1278bp) protein (426aa)
Formyl-CoA transferase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UAZ2_ADVKW
formyl-CoA transferase
Formyl-CoA transferase {ECO:0000313|EMBL:AFK62180.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_750_bf_scaffold_1257_curated_18
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21004..22176)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNR2_PUSST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGM47247.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
SCNpilot_cont_750_bf_scaffold_1257_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22705..23871
DNA (1167bp) protein (389aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEB84216.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEB84216.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Butyryl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5P0_ALIDK
SCNpilot_cont_750_bf_scaffold_1257_curated_20
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23882..24760
DNA (879bp) protein (293aa)
Citrate lyase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UAZ0_ADVKW
citrate lyase
Citrate lyase {ECO:0000313|EMBL:AFK62178.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_750_bf_scaffold_1257_curated_21
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24789..25262
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M2Y1B0_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EME55315.1}; TaxID=1278076 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber BKS 20-38.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1257_curated_22
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25268..27298
DNA (2031bp) protein (677aa)
AMP-dependent synthetase/ligase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UAZ1_ADVKW
AMP-dependent synthetase/ligase
AMP-dependent synthetase/ligase {ECO:0000313|EMBL:AFK62179.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_750_bf_scaffold_1257_curated_23
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27493..28455
DNA (963bp) protein (321aa)
Formyl-CoA transferase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UAZ2_ADVKW
formyl-CoA transferase
Formyl-CoA transferase {ECO:0000313|EMBL:AFK62180.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_750_bf_scaffold_1257_curated_24
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28589..28999)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Rhodococcus sp. R1101 RepID=UPI000376D788
Putative uncharacterized protein {ECO:0000313|EMBL:EFH31444.1}; TaxID=457429 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.;"
hypothetical protein; K07068
SCNpilot_cont_750_bf_scaffold_1257_curated_25

Not on your lists

comp(29010..30158)
DNA (1149bp) protein (383aa)
Thiolase n=1 Tax=Mycobacterium thermoresistibile ATCC 19527 RepID=G7CB25_MYCTH
Uncharacterized protein {ECO:0000313|EMBL:KKL83892.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
thiolase
SCNpilot_cont_750_bf_scaffold_1257_curated_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(30184..31728)
DNA (1545bp) protein (515aa)
Citrate synthase id=4840593 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
menE; citrate synthase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SCNpilot_cont_750_bf_scaffold_1257_curated_27
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31882..33123
DNA (1242bp) protein (414aa)
Putative integrase n=1 Tax=Enterobacter cloacae RepID=C1IVS3_ENTCL
Putative integrase {ECO:0000313|EMBL:ACO54428.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
Integrase core domain.
SCNpilot_cont_750_bf_scaffold_1257_curated_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33348..34538
DNA (1191bp) protein (397aa)
UPI0003CEB114 related cluster n=1 Tax=unknown RepID=UPI0003CEB114
Transposase {ECO:0000313|EMBL:CDX60858.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative transposase
SCNpilot_cont_750_bf_scaffold_1257_curated_29
unknown

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36278..36766
DNA (489bp) protein (163aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1257_curated_30
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36841..37902
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037295E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB97379.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Displaying items 1-30 of 35 in total

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