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SCNpilot_cont_750_bf_scaffold_1453_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1453_curated_1
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..116
DNA (114bp) protein (38aa)
Transposase and inactivated derivatives-like protein n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L1F3_METC4
transposase
Transposase and inactivated derivatives-like protein {ECO:0000313|EMBL:ACK81047.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_cont_750_bf_scaffold_1453_curated_2
unknown

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819..1136
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1453_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1133..2725
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXQ8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33239.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
FAD-binding monooxygenase
SCNpilot_cont_750_bf_scaffold_1453_curated_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2763..3524
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D7F8_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL07455.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_750_bf_scaffold_1453_curated_5
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3637..4368)
DNA (732bp) protein (244aa)
Lipolytic protein G-D-S-L family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UBF7_METS4
GDSL family lipase
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ACA16553.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_750_bf_scaffold_1453_curated_6
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4425..5678)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003798B19
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAN52428.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
SCNpilot_cont_750_bf_scaffold_1453_curated_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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5883..7082
DNA (1200bp) protein (400aa)
LuxA n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003779E39
LuxA {ECO:0000313|EMBL:ETW92941.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
LuxA-like protein rbh
SCNpilot_cont_750_bf_scaffold_1453_curated_8
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7131..8315)
DNA (1185bp) protein (395aa)
Beta-lactamase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WE0_RHOFD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABD69913.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_cont_750_bf_scaffold_1453_curated_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8371..9234)
DNA (864bp) protein (288aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ppnK; putative inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=2 Tax=Acidiphilium RepID=A5G318_ACICJ
SCNpilot_cont_750_bf_scaffold_1453_curated_10
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9327..10163)
DNA (837bp) protein (279aa)
Putative hydrolase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IXI8_ACIMA
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAJ82753.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_cont_750_bf_scaffold_1453_curated_11
unknown

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comp(10241..10345)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1453_curated_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10588..12171
DNA (1584bp) protein (528aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase n=3 Tax=Acidiphilium RepID=A5FVX6_ACICJ
SCNpilot_cont_750_bf_scaffold_1453_curated_13
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12308..12988)
DNA (681bp) protein (227aa)
Putative alanine racemase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HMN4_GLUDA
alanine racemase; K06997
Putative alanine racemase {ECO:0000313|EMBL:CAP56327.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_750_bf_scaffold_1453_curated_14
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13096..14643)
DNA (1548bp) protein (516aa)
TPR repeat-containing protein I n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0G3_9PROT
TPR repeat-containing protein I {ECO:0000313|EMBL:EGY00992.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
Conserved protein of unknown function; TPR domain
SCNpilot_cont_750_bf_scaffold_1453_curated_15
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14775..15446
DNA (672bp) protein (224aa)
thiE; putative thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Putative thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:BAJ81644.1}; EC=2.5.1.3 {ECO:0000313|EMBL:BAJ81644.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Putative thiamine-phosphate pyrophosphorylase n=2 Tax=Acidiphilium RepID=F0J0V8_ACIMA
SCNpilot_cont_750_bf_scaffold_1453_curated_16
unknown

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15631..17175
DNA (1545bp) protein (515aa)
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1453_curated_17
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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17343..17912
DNA (570bp) protein (190aa)
Cyclin-dependent kinase inhibitor 2a p19Arf domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RK88_9PROT
Cyclin-dependent kinase inhibitor 2a p19Arf domain protein {ECO:0000313|EMBL:EFH12280.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
Displaying 17 items

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