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SCNpilot_cont_750_bf_scaffold_616_curated

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_616_curated_1
unknown

Not on your lists

comp(24..326)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_616_curated_2
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1212..1412
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NY28_GRAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEU35616.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
SCNpilot_cont_750_bf_scaffold_616_curated_3
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1393..1746
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Synechococcus sp. CB0101 RepID=UPI00020012CB
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_62_13__curated
SCNpilot_cont_750_bf_scaffold_616_curated_4
unknown

Not on your lists

comp(1748..2038)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_616_curated_5
Siansivirga zeaxanthinifaciens, Siansivirga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2164..3285
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=E1PTC2_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJR03557.1}; TaxID=1454006 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Siansivirga.;" source="Siansivirga zeaxanthinifaciens CC-SAMT-1.;"
SCNpilot_cont_750_bf_scaffold_616_curated_6
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3437..4546)
DNA (1110bp) protein (370aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Acidiphilium sp. PM RepID=F7S8C4_9PROT
SCNpilot_cont_750_bf_scaffold_616_curated_7
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4599..4928)
DNA (330bp) protein (110aa)
2Fe-2S ferredoxin n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EECAA2
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:EFH10501.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
(2Fe-2S) ferredoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_cont_750_bf_scaffold_616_curated_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4934..6178)
DNA (1245bp) protein (415aa)
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035F41B3
Cysteine desulfurase NifS/aminotransferase class V {ECO:0000313|EMBL:GAN77974.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_750_bf_scaffold_616_curated_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6194..7291)
DNA (1098bp) protein (366aa)
cysteine desulfhydrase (EC:4.4.1.- 4.4.1.16); K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfhydrase {ECO:0000313|EMBL:ABI62842.1}; EC=4.4.1.- {ECO:0000313|EMBL:ABI62842.1};; EC=4.4.1.16 {ECO:0000313|EMBL:ABI62842.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Cysteine desulfhydrase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQR0_GRABC
SCNpilot_cont_750_bf_scaffold_616_curated_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7297..7791)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E76007
HTH-type transcriptional regulator {ECO:0000313|EMBL:EKE78853.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
BadM/Rrf2 family transcriptional regulator; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
SCNpilot_cont_750_bf_scaffold_616_curated_11
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7792..8514)
DNA (723bp) protein (241aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine acetyltransferase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5XU50_9PROT
SCNpilot_cont_750_bf_scaffold_616_curated_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8871..9536
DNA (666bp) protein (222aa)
Alpha/beta hydrolase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQQ9_GRABC
Hydrolase alpha/beta {ECO:0000313|EMBL:GAN78166.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
alpha/beta hydrolase; K07018
SCNpilot_cont_750_bf_scaffold_616_curated_13
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9865..12291
DNA (2427bp) protein (809aa)
ribonucleoside-triphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RGT0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EFH13491.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
SCNpilot_cont_750_bf_scaffold_616_curated_14
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12435..13499)
DNA (1065bp) protein (355aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.-); K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQD8_9PROT
SCNpilot_cont_750_bf_scaffold_616_curated_15
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13559..14803
DNA (1245bp) protein (415aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosine--tRNA ligase; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=Acidiphilium sp. PM RepID=F7S4Y9_9PROT
SCNpilot_cont_750_bf_scaffold_616_curated_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14964..15704
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000382B872
Uncharacterized protein {ECO:0000313|EMBL:ETW99868.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_750_bf_scaffold_616_curated_17
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15840..17210
DNA (1371bp) protein (457aa)
O-antigen polymerase n=1 Tax=Acidiphilium sp. PM RepID=F7S3M4_9PROT
O-antigen polymerase {ECO:0000313|EMBL:EGO96248.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
O-antigen polymerase family protein
SCNpilot_cont_750_bf_scaffold_616_curated_18
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17244..18215
DNA (972bp) protein (324aa)
PGRS-subfamily of Gly-rich proteins n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS99_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN77570.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
PGRS-subfamily Gly-rich protein
SCNpilot_cont_750_bf_scaffold_616_curated_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18220..19185
DNA (966bp) protein (322aa)
Sterol desaturase family protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BS98_GRABC
Sterol desaturase {ECO:0000313|EMBL:GAN77569.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
sterol desaturase family protein
SCNpilot_cont_750_bf_scaffold_616_curated_20
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19288..21429)
DNA (2142bp) protein (714aa)
TonB-dependent receptor, plug n=1 Tax=Acidiphilium sp. PM RepID=F7S1Y0_9PROT
TonB-dependent receptor {ECO:0000313|EMBL:GAN80463.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
TonB-dependent receptor, plug; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_750_bf_scaffold_616_curated_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

21735..22958
DNA (1224bp) protein (408aa)
III protein, CoA-transferase family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPU2_9BURK
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCNpilot_cont_750_bf_scaffold_616_curated_22
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22958..23845
DNA (888bp) protein (296aa)
citrate (pro-3S)-lyase (EC:4.1.3.6); K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
citryl-CoA lyase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B36501
Host specificity protein {ECO:0000313|EMBL:ETR76108.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_750_bf_scaffold_616_curated_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(23919..24878)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035EE13C
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:EDY17550.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
mechanosensitive ion channel MscS
SCNpilot_cont_750_bf_scaffold_616_curated_24
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25021..27210)
DNA (2190bp) protein (730aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1196835 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri CCUG 29243.;"
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri CCUG 29243 RepID=I4CW03_PSEST
hypothetical protein
SCNpilot_cont_750_bf_scaffold_616_curated_25
Novosphingobium sp. TVG9-VII, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27324..28355
DNA (1032bp) protein (344aa)
Transposase n=1 Tax=Novosphingobium sp. TVG9-VII RepID=G4WYQ0_9SPHN
Transposase {ECO:0000313|EMBL:AEP14461.1}; TaxID=1028165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. TVG9-VII.;"
putative transposase for insertion sequence element
SCNpilot_cont_750_bf_scaffold_616_curated_26
Cyanothece sp. PCC 7822, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(28788..29300)
DNA (513bp) protein (171aa)
Outer membrane protein n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UH58_CYAP2
outer membrane protein; K08995 putative membrane protein
Outer membrane protein {ECO:0000313|EMBL:ADN15657.1}; Flags: Precursor;; TaxID=497965 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7822).;"
SCNpilot_cont_750_bf_scaffold_616_curated_27
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29411..30262
DNA (852bp) protein (284aa)
Possible 3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Rhodococcus sp. (strain RHA1) RepID=Q0RVK3_RHOSR
Uncharacterized protein {ECO:0000313|EMBL:ETW93550.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
3-oxoacyl-(acyl-carrier-protein) reductase
SCNpilot_cont_750_bf_scaffold_616_curated_28
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30365..31108)
DNA (744bp) protein (248aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDM1_BEII9
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACB95457.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_750_bf_scaffold_616_curated_29
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31330..32151
DNA (822bp) protein (274aa)
Transcriptional regulator, AraC family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDM0_BEII9
AraC family transcriptional regulator {ECO:0000313|EMBL:KJC49132.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
AraC family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_616_curated_30
unknown

Not on your lists

32281..32529
DNA (249bp) protein (83aa)

This feature has no annotations

Displaying items 1-30 of 31 in total

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