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SCNpilot_expt_1000_bf_scaffold_737_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_737_curated_1
Simkania negevensis, Simkania, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

1..405
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L2Q2_SIMNZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB87748.1}; TaxID=331113 species="Bacteria; Chlamydiae; Chlamydiales; Simkaniaceae; Simkania.;" source="Simkania negevensis (strain ATCC VR-1471 / Z).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

409..861
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBA2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81038.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_737_curated_3
Leptospira interrogans, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

877..1077
DNA (201bp) protein (67aa)
Rhs-like protein {ECO:0000313|EMBL:ABK63790.1}; Flags: Fragment;; TaxID=57678 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira interrogans serovar Lai.;"
SCNpilot_expt_1000_bf_scaffold_737_curated_4
unknown

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comp(1692..1826)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_737_curated_5
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1995..2453
DNA (459bp) protein (153aa)
Endoribonuclease L-PSP n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZUY0_9BACT
Endoribonuclease L-PSP {ECO:0000313|EMBL:EON77838.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
endoribonuclease L-PSP; K07567 TdcF protein
SCNpilot_expt_1000_bf_scaffold_737_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2458..3441
DNA (984bp) protein (328aa)
3-hydroxyacyl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Niabella soli DSM 19437 RepID=H1NU95_9SPHI
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AHF16198.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_737_curated_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3450..4754
DNA (1305bp) protein (435aa)
Aminotransferase class-III n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUY7_DYAFD
class III aminotransferase
Aminotransferase class-III {ECO:0000313|EMBL:ACT93124.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4765..5745
DNA (981bp) protein (327aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Niabella soli DSM 19437 RepID=H1NU82_9SPHI
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AHF16187.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
3-hydroxyacyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_737_curated_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5738..6826
DNA (1089bp) protein (363aa)
Peptidase M19 renal dipeptidase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUY5_DYAFD
peptidase M19
Peptidase M19 renal dipeptidase {ECO:0000313|EMBL:ACT93122.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7027..8379
DNA (1353bp) protein (451aa)
Signal peptide n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUY4_DYAFD
signal peptide
Signal peptide {ECO:0000313|EMBL:ACT93121.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_11
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8428..9339
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035DE030
aldo/keto reductase
Tax=GWF2_Verrucomicrobia_62_7_curated
SCNpilot_expt_1000_bf_scaffold_737_curated_12
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9724..12939
DNA (3216bp) protein (1072aa)
TonB-dependent receptor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XTJ2_PEDHD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACU05770.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_13
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12958..14439
DNA (1482bp) protein (494aa)
RagB/SusD domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XTJ1_PEDHD
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACU05769.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_14
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14582..16045
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J1V4_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL23960.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16014..17267
DNA (1254bp) protein (418aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VW01_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93133.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_16
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17294..18760
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J1V4_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL23960.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_17
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18985..19683
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000381B195
G-D-S-L family lipolytic protein
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:ADZ79448.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19700..20671
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUZ4_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93131.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_19
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20683..23007
DNA (2325bp) protein (775aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Aminotransferase class-III n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C535_9PLAN
Aminotransferase class-III {ECO:0000313|EMBL:EDL60251.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
SCNpilot_expt_1000_bf_scaffold_737_curated_20
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23036..24547
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZUZ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EON77848.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
Na+/solute symporter
SCNpilot_expt_1000_bf_scaffold_737_curated_21
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24534..25649
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZUT8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EON77847.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
SCNpilot_expt_1000_bf_scaffold_737_curated_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26024..26830
DNA (807bp) protein (269aa)
HpcH/HpaI aldolase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUZ3_DYAFD
HpcH/HpaI aldolase
HpcH/HpaI aldolase {ECO:0000313|EMBL:ACT93130.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_23
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26833..27786
DNA (954bp) protein (318aa)
Oxidoreductase, aldo/keto reductase family n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZUT2_9BACT
Oxidoreductase, aldo/keto reductase family {ECO:0000313|EMBL:EON77842.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_737_curated_24
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27908..28804
DNA (897bp) protein (299aa)
Oxidoreductase n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZUL0_9BACT
Oxidoreductase {ECO:0000313|EMBL:EON77841.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
oxidoreductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_737_curated_25
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28811..29590
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUZ0_DYAFD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACT93127.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_737_curated_26

Not on your lists

29621..30196
DNA (576bp) protein (192aa)
alcohol dehydrogenase; K00001 alcohol dehydrogenase [EC:1.1.1.1]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037F036E
Zinc-binding dehydrogenase {ECO:0000313|EMBL:AGU10843.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_1000_bf_scaffold_737_curated_27
Lysinibacillus massiliensis, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30196..30651
DNA (456bp) protein (152aa)
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KGR92234.1}; EC=1.1.1.30 {ECO:0000313|EMBL:KGR92234.1};; TaxID=1211035 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529.;"
yxjF; 3-hydroxybutyrate dehydrogenase (EC:1.1.1.30); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase n=2 Tax=Brevibacillus RepID=J2R0U6_9BACL
SCNpilot_expt_1000_bf_scaffold_737_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30654..31520)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C411B
AraC family transcriptional regulator {ECO:0000313|EMBL:AHF16201.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_737_curated_29
unknown

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31935..32114
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 29 items

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