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SCNpilot_expt_1000_bf_scaffold_325_curated

Search features with annotation key words

Displaying items 1-30 of 260 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_325_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(515..1213)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035D8A04
Uncharacterized protein {ECO:0000313|EMBL:AHF14111.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_325_curated_2
unknown

Not on your lists

1685..2293
DNA (609bp) protein (203aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_325_curated_3
unknown

Not on your lists

3116..3649
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_325_curated_4
unknown

Not on your lists

3673..4215
DNA (543bp) protein (181aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_325_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4742..5182
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037F7A95
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01914.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_6
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5251..6732)
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7J720_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDE59714.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_325_curated_7
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6890..8428)
DNA (1539bp) protein (513aa)
RagB/SusD domain-containing protein n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7J7Z0_9PORP
RagB/SusD domain-containing protein {ECO:0000313|EMBL:CDE59713.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
RagB/SusD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_325_curated_8
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8464..11865)
DNA (3402bp) protein (1134aa)
TonB-dependent receptor n=1 Tax=Bacteroides sp. CAG:530 RepID=R6DA00_9BACE
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:KKB57216.1}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_325_curated_9
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11975..13054)
DNA (1080bp) protein (360aa)
Anti-FecI sigma factor, FecR n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YGG0_9SPHI
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:EHQ24512.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
anti-FecI sigma factor FecR
SCNpilot_expt_1000_bf_scaffold_325_curated_10
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13106..13723)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MCC3_9SPHI
Contig36, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77373.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
sigma-70 family RNA polymerase sigma factor
SCNpilot_expt_1000_bf_scaffold_325_curated_11
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13789..16899
DNA (3111bp) protein (1037aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI0003648851
Uncharacterized protein {ECO:0000313|EMBL:EJG02879.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_325_curated_12
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16904..17530
DNA (627bp) protein (209aa)
Adenylyl-sulfate kinase {ECO:0000256|RuleBase:RU004347, ECO:0000256|SAAS:SAAS00249903}; EC=2.7.1.25 {ECO:0000256|RuleBase:RU004347, ECO:0000256|SAAS:SAAS00249903};; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
adenylyLSUlfate kinase (EC:2.7.1.25); K00860 adenylylsulfate kinase [EC:2.7.1.25]
Adenylyl-sulfate kinase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JQ61_9BACT
SCNpilot_expt_1000_bf_scaffold_325_curated_13
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17532..18758
DNA (1227bp) protein (409aa)
Chromate transporter, chromate ion transporter (CHR) family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6ECS6_9SPHI
Chromate transporter, chromate ion transporter (CHR) family protein {ECO:0000313|EMBL:EDM36982.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
chromate transporter, chromate ion transporter (CHR) family
SCNpilot_expt_1000_bf_scaffold_325_curated_14
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18765..19772
DNA (1008bp) protein (336aa)
Sulfotransferase n=1 Tax=Pedobacter sp. BAL39 RepID=A6ECS5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIA94299.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
sulfotransferase
SCNpilot_expt_1000_bf_scaffold_325_curated_15
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19769..20536
DNA (768bp) protein (256aa)
cysQ; sulfite synthesis pathway protein (EC:3.1.3.7); K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
Sulfite synthesis pathway protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6ECS4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ22284.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
SCNpilot_expt_1000_bf_scaffold_325_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20559..21899)
DNA (1341bp) protein (447aa)
glutamate dehydrogenase; K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Glutamate dehydrogenase n=1 Tax=Niabella soli DSM 19437 RepID=H1NSG9_9SPHI
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_325_curated_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22085..24949)
DNA (2865bp) protein (955aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
carB; carbamoyl phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
carbamoyl phosphate synthase large subunit n=1 Tax=Niabella aurantiaca RepID=UPI0003613024
SCNpilot_expt_1000_bf_scaffold_325_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25271..25966)
DNA (696bp) protein (232aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGF2_NIAKG
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEV97375.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25978..27270)
DNA (1293bp) protein (431aa)
integral membrane sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGF3_NIAKG
SCNpilot_expt_1000_bf_scaffold_325_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27394..28332
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D5B42
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28541..29011
DNA (471bp) protein (157aa)
Transcriptional regulator, AsnC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG74_NIAKG
transcriptional regulator, AsnC family; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AEW02713.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29094..30188)
DNA (1095bp) protein (365aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG76_NIAKG
ABC transporter; K02034 peptide/nickel transport system permease protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEW02715.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_23
unknown

Not on your lists

31208..31588
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_325_curated_24
Halobacillus halophilus, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31675..31932
DNA (258bp) protein (86aa)
M10 family peptidase (EC:3.4.24.-)
M10 family peptidase {ECO:0000313|EMBL:CCG44705.1}; EC=3.4.24.- {ECO:0000313|EMBL:CCG44705.1};; TaxID=866895 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Halobacillus.;" source="Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 /; NBRC 102448/ NCIMB 2269) (Sporosarcina halophila).;"
M10 family peptidase n=1 Tax=Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) RepID=I0JKN6_HALH3
SCNpilot_expt_1000_bf_scaffold_325_curated_25
Tannerella forsythia, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31901..33028
DNA (1128bp) protein (376aa)
Karilysin; EC=3.4.24.-;; Matrix metalloprotease-like enzyme; Short=MMP-like enzyme;; Contains:; Karilysin long form Kly38; Contains:; Karilysin short form Kly18; Flags: Precursor;; TaxID=203275 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338); (Bacteroides forsythus).;"
Karilysin protease n=1 Tax=Tannerella forsythensis RepID=D0EM77_TANFO
peptidase M10A and M12B matrixin and adamalysin
SCNpilot_expt_1000_bf_scaffold_325_curated_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33328..34470)
DNA (1143bp) protein (381aa)
Glycosyl transferase family 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG77_NIAKG
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEW02716.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34487..35287)
DNA (801bp) protein (267aa)
Alpha/beta hydrolase fold protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG78_NIAKG
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AEW02717.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35559..38102
DNA (2544bp) protein (848aa)
TonB-dependent receptor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFJ2_NIAKG
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEV98423.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_325_curated_29
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38266..39723)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GLJ3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KGE14555.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_325_curated_30
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39744..43025)
DNA (3282bp) protein (1094aa)
Putative outer membrane protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E7S2_9SPHI
Putative outer membrane protein {ECO:0000313|EMBL:EDM38052.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
TonB-dependent receptor
Displaying items 1-30 of 260 in total

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