ggKbase home page

SCNpilot_expt_1000_bf_scaffold_203_curated

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_203_curated_1
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(357..2507)
DNA (2151bp) protein (717aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037416EC
Collagen-binding protein {ECO:0000313|EMBL:KIC90514.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_203_curated_2
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3396..4886)
DNA (1491bp) protein (497aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X2R0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05778.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
RagB/SusD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_203_curated_3
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4896..8279)
DNA (3384bp) protein (1128aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X2Q9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05777.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
tonB-dependent Receptor Plug domain-containing protein
SCNpilot_expt_1000_bf_scaffold_203_curated_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8335..9498)
DNA (1164bp) protein (388aa)
Anti-FecI sigma factor, FecR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLS4_CHIPD
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACU60361.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_203_curated_5
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9683..10231)
DNA (549bp) protein (183aa)
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVE1_PEDHD
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04007.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_203_curated_6
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10434..11300
DNA (867bp) protein (289aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF08_CHIPD">RepID=C7PF08_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ETZ24658.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
glycerophosphoryl diester phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_203_curated_7
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12036..13838)
DNA (1803bp) protein (601aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MII0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIA95200.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_203_curated_8
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14051..15538)
DNA (1488bp) protein (496aa)
sialate O-acetylesterase; K05970 sialate O-acetylesterase [EC:3.1.1.53]
Sialate O-acetylesterase n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4AN28_MARSH
Sialate O-acetylesterase {ECO:0000313|EMBL:EAR02400.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain HTCC2170 / KCCM 42371).;"
SCNpilot_expt_1000_bf_scaffold_203_curated_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(15554..16735)
DNA (1182bp) protein (394aa)
N-acylglucosamine 2-epimerase (EC:5.1.3.8); K01787 N-acylglucosamine 2-epimerase [EC:5.1.3.8]
N-acylglucosamine 2-epimerase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y403_PEDHD
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_203_curated_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(16744..18309)
DNA (1566bp) protein (522aa)
glycosyl hydrolase family protein (EC:3.2.1.18)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002FEB804
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_203_curated_11
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18327..19559)
DNA (1233bp) protein (411aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y406_PEDHD
MFS transporter {ECO:0000313|EMBL:KIA92401.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_203_curated_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19559..20665)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037D5CED
Kelch repeat-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_203_curated_13
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20716..21657)
DNA (942bp) protein (314aa)
dihydrodipicolinate synthetase; K01639 N-acetylneuraminate lyase [EC:4.1.3.3]
Dihydrodipicolinate synthetase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W5M0_DYAFD
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:ETZ22563.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
SCNpilot_expt_1000_bf_scaffold_203_curated_14
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21733..23298)
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000361B1DE
RagB/SusD domain-containing protein
Tax=GWB2_Bacteroidetes_41_8_curated
SCNpilot_expt_1000_bf_scaffold_203_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23331..26729)
DNA (3399bp) protein (1133aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000361B533
TonB-dependent receptor {ECO:0000313|EMBL:KIC91869.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
TonB-dependent receptor plug
SCNpilot_expt_1000_bf_scaffold_203_curated_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

26903..27613
DNA (711bp) protein (237aa)
GntR domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y411_PEDHD
GntR family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_203_curated_17
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27619..28044)
DNA (426bp) protein (142aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
protein-tyrosine phosphatase n=1 Tax=Cytophaga aurantiaca RepID=UPI00037636AE
Protein tyrosine phosphatase {ECO:0000313|EMBL:KGO86281.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
SCNpilot_expt_1000_bf_scaffold_203_curated_18
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28120..28968)
DNA (849bp) protein (283aa)
arsenite S-adenosylmethyltransferase n=1 Tax=Segetibacter koreensis RepID=UPI00035E7279
Arsenite S-adenosylmethyltransferase {ECO:0000313|EMBL:KIC96204.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_203_curated_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29024..29359)
DNA (336bp) protein (112aa)
Transcriptional regulator, ArsR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGW9_CHIPD
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACU63520.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_203_curated_20
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30033..30749)
DNA (717bp) protein (239aa)
Glycoside hydrolase family 20 protein n=1 Tax=sediment metagenome RepID=D9PHG8_9ZZZZ
beta-N-acetylhexosaminidase
Tax=RBG_13_Bacteroidetes_42_15_curated
SCNpilot_expt_1000_bf_scaffold_203_curated_21
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31036..31560
DNA (525bp) protein (175aa)
Quinate/shikimate dehydrogenase (Quinone) {ECO:0000313|EMBL:EKB51083.1}; EC=1.1.5.8 {ECO:0000313|EMBL:EKB51083.1};; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
quinoprotein glucose dehydrogenase; K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00035F794F
SCNpilot_expt_1000_bf_scaffold_203_curated_22
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

31636..31872
DNA (237bp) protein (79aa)
quinoprotein glucose dehydrogenase; K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Glucose dehydrogenase, PQQ-dependent n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZS60_9BACT
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
SCNpilot_expt_1000_bf_scaffold_203_curated_23
Jejuia pallidilutea, Jejuia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32029..33312)
DNA (1284bp) protein (428aa)
N-acetyl-L,L-diaminopimelate deacetylase {ECO:0000313|EMBL:GAL70425.1}; EC=3.5.1.47 {ECO:0000313|EMBL:GAL70425.1};; TaxID=504487 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Jejuia.;" source="Jejuia pallidilutea.;"
amidohydrolase (EC:3.5.1.47)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00036FD1D6
SCNpilot_expt_1000_bf_scaffold_203_curated_24
unknown

Not on your lists

comp(33299..33460)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_203_curated_25
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33421..33771)
DNA (351bp) protein (117aa)
Transcriptional regulator, HxlR family n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FD57_FLAJ1
HxlR family transcriptional regulator {ECO:0000313|EMBL:GAL85993.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
HxlR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_203_curated_26
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33879..34511
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003788BE5
Uncharacterized protein {ECO:0000313|EMBL:GAL85994.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
nitroreductase
SCNpilot_expt_1000_bf_scaffold_203_curated_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34578..36026)
DNA (1449bp) protein (483aa)
Sulfatase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTS7_DYAFD
sulfatase
Sulfatase {ECO:0000313|EMBL:ACT93020.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_203_curated_28
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36049..37560)
DNA (1512bp) protein (504aa)
Sulfatase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S8N6_PEDSD
sulfatase
Sulfatase {ECO:0000313|EMBL:ADY52367.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_203_curated_29
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(37560..39488)
DNA (1929bp) protein (643aa)
sulfatase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003827EE4
sulfatase
Sulfatase {ECO:0000313|EMBL:ACT93738.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_203_curated_30
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(39499..40995)
DNA (1497bp) protein (499aa)
RagB/SusD domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTS6_DYAFD
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACT93019.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Displaying items 1-30 of 98 in total

View Taxonomy