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SCNpilot_expt_1000_bf_scaffold_177_curated

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_177_curated_1
unknown

Not on your lists

comp(1..66)
DNA (66bp) protein (22aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_177_curated_2
Polaribacter sp. Hel1_85, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(86..1045)
DNA (960bp) protein (320aa)
biotin attachment protein n=1 Tax=Pedobacter arcticus RepID=UPI000362364D
Biotin attachment protein {ECO:0000313|EMBL:KGL63915.1}; TaxID=1250005 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. Hel1_85.;"
biotin/lipoyl attachment domain-containing protein; K01993 HlyD family secretion protein
SCNpilot_expt_1000_bf_scaffold_177_curated_3
Gillisia limnaea, Gillisia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1069..2430)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BS28_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHQ03554.1}; Flags: Precursor;; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 15749.;"
outer membrane efflux protein
SCNpilot_expt_1000_bf_scaffold_177_curated_4
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2947..3609
DNA (663bp) protein (221aa)
ABC transporter related protein id=3090790 bin=GWA2_Bacteroidetes_40_14 species=unknown genus=Krokinobacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_40_14 organism_group=Bacteroidetes organism_desc=Good
ABC transporter
Tax=GWE2_Bacteroidetes_40_63_curated
SCNpilot_expt_1000_bf_scaffold_177_curated_5
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4306..5337
DNA (1032bp) protein (344aa)
Regulatory protein GntR HTH n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XV64_PEDHD
GntR family transcriptional regulator
Regulatory protein GntR HTH {ECO:0000313|EMBL:ACU06072.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_6
unknown

Not on your lists

5497..6045
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036045CF
SCNpilot_expt_1000_bf_scaffold_177_curated_7
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6108..7388)
DNA (1281bp) protein (427aa)
Putative uncharacterized protein id=2484784 bin=GWC2_Bacteroidetes_40_22 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
SCNpilot_expt_1000_bf_scaffold_177_curated_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7460..9391)
DNA (1932bp) protein (644aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTL0_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92953.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9442..10647)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FB820
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92952.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10647..11918)
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036FA694
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92951.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_11
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11977..13533)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036133C6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51265.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_12
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13559..16993)
DNA (3435bp) protein (1145aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377AF20
TonB-dependent receptor {ECO:0000313|EMBL:AEI51266.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_177_curated_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17174..18319)
DNA (1146bp) protein (382aa)
Anti-FecI sigma factor, FecR n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7F5_PALPW
anti-feci sigma factor, fecr
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ADQ80649.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_14
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18267..19004)
DNA (738bp) protein (246aa)
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XT34_PEDHD
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU03595.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19333..20097)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037E41FB
Putative two-component response regulator {ECO:0000313|EMBL:GAO44607.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
LytTR family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_177_curated_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20192..21256)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F3CCB
Uncharacterized protein {ECO:0000313|EMBL:KIC96032.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
signal transduction histidine kinase LytS
SCNpilot_expt_1000_bf_scaffold_177_curated_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21253..22308)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037583C9
Putative two-component histidine kinase {ECO:0000313|EMBL:GAO44606.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
signal transduction histidine kinase LytS
SCNpilot_expt_1000_bf_scaffold_177_curated_18
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22310..25318)
DNA (3009bp) protein (1003aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000372E5CD
Uncharacterized protein {ECO:0000313|EMBL:KIC96031.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Putative periplasmic ligand-binding sensor domain protein
SCNpilot_expt_1000_bf_scaffold_177_curated_19
unknown

Not on your lists

25997..27298
DNA (1302bp) protein (434aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_177_curated_20

Not on your lists

27323..28663
DNA (1341bp) protein (447aa)
Glycosyltransferase n=1 Tax=uncultured bacterium RepID=R4J7W2_9BACT
Glycosyltransferase {ECO:0000313|EMBL:AGH18139.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_177_curated_21
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28746..29675
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003767738
Uncharacterized protein {ECO:0000313|EMBL:KIC93399.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
cytochrome c-like protein
SCNpilot_expt_1000_bf_scaffold_177_curated_22
Algoriphagus machipongonensis, Algoriphagus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29830..34266)
DNA (4437bp) protein (1479aa)
Putative uncharacterized protein n=1 Tax=Algoriphagus machipongonensis RepID=A3I330_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EAZ79229.1}; TaxID=388413 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Algoriphagus.;" source="Algoriphagus machipongonensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_177_curated_23
Algoriphagus machipongonensis, Algoriphagus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34414..39999)
DNA (5586bp) protein (1862aa)
Putative uncharacterized protein n=1 Tax=Algoriphagus machipongonensis RepID=A3I331_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EAZ79230.1}; TaxID=388413 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Algoriphagus.;" source="Algoriphagus machipongonensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_177_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(40228..41148)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000366B304
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96527.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_25
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(41285..41680)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD59_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU63273.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_26
BJP_IG2102_Flavobacteriales_34_12, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

41908..42300
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BUG8_9FLAO
hypothetical protein
Tax=BJP_IG2102_Flavobacteriales_34_12
SCNpilot_expt_1000_bf_scaffold_177_curated_27
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

42378..43352
DNA (975bp) protein (325aa)
deoxyhypusine synthase; K00809 deoxyhypusine synthase [EC:2.5.1.46]
Deoxyhypusine synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG05_CHIPD
Deoxyhypusine synthase {ECO:0000313|EMBL:ACU57988.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_28
unknown

Not on your lists

comp(43392..43751)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_177_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(43860..45365)
DNA (1506bp) protein (502aa)
Peptidase M28 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH05_NIAKG
peptidase M28
Peptidase M28 {ECO:0000313|EMBL:AEW00616.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_177_curated_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

45458..45907
DNA (450bp) protein (150aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THI6_NIAKG
CMP/dCMP deaminase zinc-binding protein
Displaying items 1-30 of 108 in total

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