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SCNpilot_expt_1000_bf_scaffold_6447_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6447_curated_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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578..880
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00037B5926
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_6447_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(887..2176)
DNA (1290bp) protein (430aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Niabella soli DSM 19437 RepID=H1NNP9_9SPHI
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000313|EMBL:AHF15222.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_6447_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2275..4383
DNA (2109bp) protein (703aa)
prolyl oligopeptidase; K01322 prolyl oligopeptidase [EC:3.4.21.26]
Prolyl oligopeptidase n=1 Tax=Niabella soli DSM 19437 RepID=H1NPN4_9SPHI
Prolyl endopeptidase {ECO:0000313|EMBL:AHF14962.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_6447_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4453..5025
DNA (573bp) protein (191aa)
DNA mismatch repair protein MutT n=1 Tax=Cytophagales str. B6 RepID=UPI0003B7A25B
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AEV97899.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_6447_curated_5
unknown

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5038..5349
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6447_curated_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5419..5613
DNA (195bp) protein (65aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
tRNA(Ile)-lysidine synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB86_CHIPD
SCNpilot_expt_1000_bf_scaffold_6447_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5690..6337)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000378E7E2
TetR family transcriptional regulator {ECO:0000313|EMBL:AHF15104.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6447_curated_8
unknown

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comp(6303..6419)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6447_curated_9
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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6677..7135
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL57_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAY29023.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
SCNpilot_expt_1000_bf_scaffold_6447_curated_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(7446..7733)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI00037D14AA
Uncharacterized protein {ECO:0000313|EMBL:KIC89749.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6447_curated_11
Bacteroides cellulosilyticus CAG:158, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7946..9832)
DNA (1887bp) protein (629aa)
glycoside hydrolase family protein; K05349 beta-glucosidase [EC:3.2.1.21]
Uncharacterized protein n=1 Tax=Bacteroides cellulosilyticus CAG:158 RepID=R6KUQ8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB73656.1}; TaxID=1263038 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides cellulosilyticus CAG:158.;"
Displaying 11 items

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