ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3432_curated

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3432_curated_1
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..780)
DNA (780bp) protein (260aa)
dehydrogenase n=1 Tax=Niabella aurantiaca RepID=UPI00037EC81E
membrane-bound dehydrogenase domain-containing protein
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:ACU02556.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_3432_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

785..3103
DNA (2319bp) protein (773aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMF6_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF14482.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3432_curated_3

Not on your lists

3131..4669
DNA (1539bp) protein (513aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; TaxID=1112296 species="Bacteria; environmental samples.;" source="uncultured bacterium G2_7.;"
alpha-galactosidase (EC:3.2.1.22); K07407 alpha-galactosidase [EC:3.2.1.22]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000382ED8A
SCNpilot_expt_1000_bf_scaffold_3432_curated_4
unknown

Not on your lists

6697..7104
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3432_curated_5
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7603..10800
DNA (3198bp) protein (1066aa)
TonB-dependent receptor plug id=2700489 bin=GWF2_Bacteroidetes_42_66 species=Niabella soli genus=Niabella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73
TonB-dependent receptor plug
Tax=GWE2_Bacteroidetes_42_39_curated
SCNpilot_expt_1000_bf_scaffold_3432_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10820..12715
DNA (1896bp) protein (632aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003635853
Uncharacterized protein {ECO:0000313|EMBL:AHF17199.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RagB/SusD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3432_curated_7
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12742..13785
DNA (1044bp) protein (348aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZ87_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU02569.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_3432_curated_8
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13879..14895
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y3R2_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU03341.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_3432_curated_9
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14940..15485)
DNA (546bp) protein (182aa)
L-alanine-DL-glutamate epimerase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUQ3_PEDHD
L-alanine-DL-glutamate epimerase
L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:ACU03903.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
Displaying 9 items

View Taxonomy