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SCNpilot_expt_1000_bf_scaffold_2085_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2085_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30..422)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037A5846
Rare lipoprotein A {ECO:0000313|EMBL:AHF14457.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Rare lipoprotein A; K03642 rare lipoprotein A
SCNpilot_expt_1000_bf_scaffold_2085_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(646..1053)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037A5846
Rare lipoprotein A {ECO:0000313|EMBL:AHF14457.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Rare lipoprotein A; K03642 rare lipoprotein A
SCNpilot_expt_1000_bf_scaffold_2085_curated_3
unknown

Not on your lists

comp(1247..2071)
DNA (825bp) protein (275aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2085_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2106..3413)
DNA (1308bp) protein (436aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=929713 species="Bacteria; Bac
30S ribosomal protein S12; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-]
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Niabella soli DSM 19437 RepID=H1NLA9_9SPHI
SCNpilot_expt_1000_bf_scaffold_2085_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5122..5598)
DNA (477bp) protein (159aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003639BD6
FKBP-type peptidylprolyl isomerase
SCNpilot_expt_1000_bf_scaffold_2085_curated_6
unknown

Not on your lists

comp(5612..6139)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003809E08
SCNpilot_expt_1000_bf_scaffold_2085_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6168..6488)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000367D07E
Uncharacterized protein {ECO:0000313|EMBL:AHF17997.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2085_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6521..7429
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036890EB
Uncharacterized protein {ECO:0000313|EMBL:AHF17998.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2085_curated_9
unknown

Not on your lists

7661..7999
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2085_curated_10
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8049..9614)
DNA (1566bp) protein (522aa)
periplasmic protease id=4483751 bin=GWC2_Bacteroidetes_46_850 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
peptidase, S41 family
Tax=GWC2_Bacteroidetes_46_850_curated
SCNpilot_expt_1000_bf_scaffold_2085_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9669..12098
DNA (2430bp) protein (810aa)
Malic enzyme {ECO:0000313|EMBL:AHF16614.1}; EC=1.1.1.40 {ECO:0000313|EMBL:AHF16614.1};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
allosteric NADP-dependent malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
malic enzyme n=1 Tax=Niabella aurantiaca RepID=UPI00037C5ED3
SCNpilot_expt_1000_bf_scaffold_2085_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12127..12864
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRY4_9SPHI
ABC transporter permease {ECO:0000313|EMBL:AHF16615.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K02066 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2085_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12880..13746
DNA (867bp) protein (289aa)
phosphonate ABC transporter ATP-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI00036CB983
Phosphonate ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF16616.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
phosphonate-transporting ATPase; K02065 putative ABC transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2085_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13814..14692
DNA (879bp) protein (293aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Niabella soli DSM 19437 RepID=H1NRY6_9SPHI
SCNpilot_expt_1000_bf_scaffold_2085_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15024..15506
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSS3_9SPHI
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:AHF16713.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
isoprenylcysteine carboxyl methyltransferase
SCNpilot_expt_1000_bf_scaffold_2085_curated_16
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

15667..16119
DNA (453bp) protein (151aa)
Putative hydroxylaminobenzene mutase id=4440589 bin=GWF2_Ignavibacteria_33_9 species=Indibacter alkaliphilus genus=Indibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
Putative hydroxylaminobenzene mutase
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_2085_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16386..17432
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037ED781
RND transporter {ECO:0000313|EMBL:AHF14101.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_2085_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17458..20583
DNA (3126bp) protein (1042aa)
acriflavin resistance protein n=1 Tax=Niabella aurantiaca RepID=UPI00035E266F
Acriflavin resistance protein {ECO:0000313|EMBL:AHF14100.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_1000_bf_scaffold_2085_curated_19
unknown

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20558..20692
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 19 items

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