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SCNpilot_expt_1000_bf_scaffold_1522_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1522_curated_1
unknown

Not on your lists

comp(1..78)
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1522_curated_2
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75..626)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00035E3F5E
Flagellar motor protein MotA {ECO:0000313|EMBL:KGF80006.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_3
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(630..3050)
DNA (2421bp) protein (807aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036C42C6
Uncharacterized protein {ECO:0000313|EMBL:KEO72970.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_4
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3541..4392)
DNA (852bp) protein (284aa)
Carboxylesterase type B n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L8E6_HALH1
carboxylesterase type B
Carboxylesterase type B {ECO:0000313|EMBL:AEE54654.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_1000_bf_scaffold_1522_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4476..5066)
DNA (591bp) protein (197aa)
ribonuclease, Rne/Rng family; K08301 ribonuclease G [EC:3.1.26.-]
ribonuclease G n=1 Tax=Niabella aurantiaca RepID=UPI00036A796F
Ribonuclease G {ECO:0000313|EMBL:AHF16418.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1522_curated_6
unknown

Not on your lists

5190..5423
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1522_curated_7
unknown

Not on your lists

6376..6561
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1522_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6480..7349)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036C547A
Uncharacterized protein {ECO:0000313|EMBL:AHF17933.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7471..7794)
DNA (324bp) protein (108aa)
Histone family protein DNA-binding protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQG6_9SPHI
DNA-binding protein {ECO:0000313|EMBL:AHF16417.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
SCNpilot_expt_1000_bf_scaffold_1522_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7922..8995
DNA (1074bp) protein (358aa)
A/G-specific DNA-adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-]
A/G-specific DNA-adenine glycosylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQG5_9SPHI
Adenine glycosylase {ECO:0000313|EMBL:AHF16416.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1522_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9086..9493
DNA (408bp) protein (136aa)
single-stranded DNA-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI00036B5C1B
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
single-strand binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9533..10873
DNA (1341bp) protein (447aa)
protein involved in gliding motility GldE n=1 Tax=Niabella aurantiaca RepID=UPI00037960F6
Protein involved in gliding motility GldE {ECO:0000313|EMBL:AHF16414.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_13
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10875..12455)
DNA (1581bp) protein (527aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81); K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
N-acyl-D-amino-acid deacylase {ECO:0000313|EMBL:AEI49515.1}; EC=3.5.1.81 {ECO:0000313|EMBL:AEI49515.1};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036EE0B8
SCNpilot_expt_1000_bf_scaffold_1522_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12652..13191)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQA5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF15877.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K08976 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13151..13921)
DNA (771bp) protein (257aa)
electron transporter SenC n=1 Tax=Niabella aurantiaca RepID=UPI000368C0B2
Electron transporter SenC {ECO:0000313|EMBL:AHF15878.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_expt_1000_bf_scaffold_1522_curated_16
unknown

Not on your lists

comp(14049..14414)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1522_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(14541..15881)
DNA (1341bp) protein (447aa)
Signal recognition particle protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRU8_9SPHI
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54
SCNpilot_expt_1000_bf_scaffold_1522_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16119..16496
DNA (378bp) protein (126aa)
ATPase n=1 Tax=Niabella aurantiaca RepID=UPI0003775BE4
ATPase {ECO:0000313|EMBL:AHF16581.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
activator of HSP90 ATPase 1 family protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16539..17270)
DNA (732bp) protein (244aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase cyclophilin type n=1 Tax=Niabella soli DSM 19437 RepID=H1NPX1_9SPHI
Peptidylprolyl isomerase {ECO:0000313|EMBL:AHF14895.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1522_curated_20
unknown

Not on your lists

17716..17874
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1522_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17886..18362)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035ED83B
Uncharacterized protein {ECO:0000313|EMBL:AHF15798.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_22
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18409..18813)
DNA (405bp) protein (135aa)
alpha-1,2-fucosidase 2 (EC:3.2.1.51)
Alpha-1,2-fucosidase 2 n=1 Tax=Capnocytophaga canimorsus (strain 5) RepID=F9YUY3_CAPCC
Glycoside hydrolase family protein {ECO:0000313|EMBL:CEN43168.1}; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga canimorsus.;"
SCNpilot_expt_1000_bf_scaffold_1522_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21010..21570
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQE3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16397.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_24
unknown

Not on your lists

comp(21648..21860)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1522_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21971..23158
DNA (1188bp) protein (396aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
2-amino-3-ketobutyrate coenzyme A ligase; K00639 glycine C-acetyltransferase [EC:2.3.1.29]
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NSJ8_9SPHI
SCNpilot_expt_1000_bf_scaffold_1522_curated_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23250..23993
DNA (744bp) protein (248aa)
undecaprenyl pyrophosphate synthase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
UDP pyrophosphate synthase n=1 Tax=Niabella aurantiaca RepID=UPI0003791EAC
SCNpilot_expt_1000_bf_scaffold_1522_curated_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24137..26890
DNA (2754bp) protein (918aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036B77D6
Uncharacterized protein {ECO:0000313|EMBL:AHF16560.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
surface antigen (D15); K07277 outer membrane protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26940..27452
DNA (513bp) protein (171aa)
membrane protein n=1 Tax=Niabella aurantiaca RepID=UPI00036CAB9F
Membrane protein {ECO:0000313|EMBL:AHF16561.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
outer membrane chaperone Skp; K06142 outer membrane protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_29
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27503..28036
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F5005
Molecular chaperone Skp {ECO:0000313|EMBL:AHF16562.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
outer membrane chaperone Skp; K06142 outer membrane protein
SCNpilot_expt_1000_bf_scaffold_1522_curated_30
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28159..28998
DNA (840bp) protein (280aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3]
glutamate racemase n=1 Tax=Niabella aurantiaca RepID=UPI00037AB98C
Displaying items 1-30 of 32 in total

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