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SCNpilot_expt_1000_bf_scaffold_1734_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1734_curated_1
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29..304)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7Y9Y4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFC18231.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
Txe/YoeB family addiction module toxin
SCNpilot_expt_1000_bf_scaffold_1734_curated_2
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(316..567)
DNA (252bp) protein (84aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZUU2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS17548.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
SCNpilot_expt_1000_bf_scaffold_1734_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(713..1540)
DNA (828bp) protein (276aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
methionine aminopeptidase n=1 Tax=Niabella aurantiaca RepID=UPI0003691F69
SCNpilot_expt_1000_bf_scaffold_1734_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(1575..2915)
DNA (1341bp) protein (447aa)
Protein translocase subunit SecY n=1 Tax=Niabella soli DSM 19437 RepID=H1NNV2_9SPHI
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
protein translocase subunit secY/sec61 alpha; K03076 preprotein translocase subunit SecY
SCNpilot_expt_1000_bf_scaffold_1734_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(2988..3437)
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Niabella aurantiaca RepID=UPI0003647F40
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
SCNpilot_expt_1000_bf_scaffold_1734_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(3559..3738)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNV0_9SPHI
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
SCNpilot_expt_1000_bf_scaffold_1734_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(3839..4357)
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=1 Tax=Niabella aurantiaca RepID=UPI0003799DD6
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
SCNpilot_expt_1000_bf_scaffold_1734_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4385..4741)
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNU8_9SPHI
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_expt_1000_bf_scaffold_1734_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(4829..5383)
DNA (555bp) protein (185aa)
50S ribosomal protein L6 n=1 Tax=Niabella aurantiaca RepID=UPI00037E6D09
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
SCNpilot_expt_1000_bf_scaffold_1734_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(5546..5944)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNU6_9SPHI
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_expt_1000_bf_scaffold_1734_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6071..6340)
DNA (270bp) protein (90aa)
30S ribosomal protein S14 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNU5_9SPHI
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
SCNpilot_expt_1000_bf_scaffold_1734_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6361..6927)
DNA (567bp) protein (189aa)
50S ribosomal protein L5 n=1 Tax=Niabella aurantiaca RepID=UPI0003703F1D
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_expt_1000_bf_scaffold_1734_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6979..7404)
DNA (426bp) protein (142aa)
50S ribosomal protein L24 n=1 Tax=Niabella aurantiaca RepID=UPI000378BB79
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
SCNpilot_expt_1000_bf_scaffold_1734_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7414..7782)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNU2_9SPHI
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
SCNpilot_expt_1000_bf_scaffold_1734_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7894..8151)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Niabella aurantiaca RepID=UPI00036FE6A6
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
SCNpilot_expt_1000_bf_scaffold_1734_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(8181..8396)
DNA (216bp) protein (72aa)
50S ribosomal protein L29 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNU0_9SPHI
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
SCNpilot_expt_1000_bf_scaffold_1734_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(8409..8831)
DNA (423bp) protein (141aa)
50S ribosomal protein L16 n=1 Tax=Niabella aurantiaca RepID=UPI00035CC9C5
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_expt_1000_bf_scaffold_1734_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(8905..9669)
DNA (765bp) protein (255aa)
30S ribosomal protein S3 n=1 Tax=Niabella aurantiaca RepID=UPI0003727C38
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
SCNpilot_expt_1000_bf_scaffold_1734_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(9679..10137)
DNA (459bp) protein (153aa)
50S ribosomal protein L22 n=1 Tax=Niabella aurantiaca RepID=UPI00036B64BA
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_expt_1000_bf_scaffold_1734_curated_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(10263..10529)
DNA (267bp) protein (89aa)
30S ribosomal protein S19 n=1 Tax=Niabella aurantiaca RepID=UPI00036C3C51
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_expt_1000_bf_scaffold_1734_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(10634..11449)
DNA (816bp) protein (272aa)
50S ribosomal protein L2 n=1 Tax=Niabella aurantiaca RepID=UPI0003722E87
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_expt_1000_bf_scaffold_1734_curated_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11540..11839)
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Niabella aurantiaca RepID=UPI0003796E17
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_expt_1000_bf_scaffold_1734_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11859..12497)
DNA (639bp) protein (213aa)
50S ribosomal protein L4 n=1 Tax=Niabella aurantiaca RepID=UPI0003779691
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
SCNpilot_expt_1000_bf_scaffold_1734_curated_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(12524..13174)
DNA (651bp) protein (217aa)
50S ribosomal protein L3 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNT2_9SPHI
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
Displaying 24 items

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