ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7183_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7183_curated_1
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3..149)
DNA (147bp) protein (49aa)
riboflavin biosynthesis protein ribD; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Riboflavin biosynthesis protein RibD n=2 Tax=Parabacteroides RepID=N2B0Q8_9PORP
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
SCNpilot_expt_1000_bf_scaffold_7183_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

182..1030
DNA (849bp) protein (283aa)
protein-(glutamine-N5) methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Protein-(Glutamine-N5) methyltransferase, release factor-specific n=1 Tax=Niabella soli DSM 19437 RepID=H1NKM8_9SPHI
Glutamine methyltransferase {ECO:0000313|EMBL:AHF14633.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_7183_curated_3
unknown

Not on your lists

1071..1232
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7183_curated_4
unknown

Not on your lists

1244..1393
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7183_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1451..3133
DNA (1683bp) protein (561aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000364C18B
Peptidase S8 {ECO:0000313|EMBL:AHF14253.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase S8 and S53 subtilisin kexin sedolisin
SCNpilot_expt_1000_bf_scaffold_7183_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3320..3805
DNA (486bp) protein (162aa)
CMP/dCMP deaminase zinc-binding protein; K01489 cytidine deaminase [EC:3.5.4.5]
Cytidine deaminase n=1 Tax=Niabella soli DSM 19437 RepID=H1NLR1_9SPHI
dCMP deaminase {ECO:0000313|EMBL:AHF14785.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_7183_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4058..5392)
DNA (1335bp) protein (445aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035C98D7
SCNpilot_expt_1000_bf_scaffold_7183_curated_8
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5419..5733)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB85_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:GAO43682.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7183_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6179..7987
DNA (1809bp) protein (603aa)
Peptidyl-dipeptidase Dcp n=1 Tax=Niabella soli DSM 19437 RepID=H1NK52_9SPHI
Dipeptidyl carboxypeptidase II {ECO:0000313|EMBL:AHF14022.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
dipeptidyl carboxypeptidase II
SCNpilot_expt_1000_bf_scaffold_7183_curated_10
Myroides profundi, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8037..8630
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000369B8F4
Uncharacterized protein {ECO:0000313|EMBL:AJH15440.1}; TaxID=480520 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides profundi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7183_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9113..9949
DNA (837bp) protein (279aa)
Glutamine cyclotransferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NP94_9SPHI
Glutamine cyclotransferase {ECO:0000313|EMBL:AHF15067.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
glutamine cyclotransferase
SCNpilot_expt_1000_bf_scaffold_7183_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9950..10687)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036A5B57
Type 12 methyltransferase {ECO:0000313|EMBL:AHF15068.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
type 12 methyltransferase
Displaying 12 items

View Taxonomy