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SCNpilot_expt_1000_bf_scaffold_1489_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1489_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..942)
DNA (942bp) protein (314aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
leucyl-tRNA synthetase n=1 Tax=Niabella aurantiaca RepID=UPI000373279A
SCNpilot_expt_1000_bf_scaffold_1489_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(956..1678)
DNA (723bp) protein (241aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ76_9SPHI
SCNpilot_expt_1000_bf_scaffold_1489_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2732..2962
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035FF8F1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03159.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1489_curated_4
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3019..4284)
DNA (1266bp) protein (422aa)
Major facilitator superfamily MFS_1 n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L104_HALH1
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEE51591.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_1000_bf_scaffold_1489_curated_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4577..5398
DNA (822bp) protein (274aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000256|SAAS:SAAS00094257};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036DBF84
undecaprenyl-diphosphatase
SCNpilot_expt_1000_bf_scaffold_1489_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5432..6742
DNA (1311bp) protein (437aa)
MFS transporter permease n=1 Tax=Niabella aurantiaca RepID=UPI00036425C9
MFS transporter permease {ECO:0000313|EMBL:AHF15992.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
major facilitator superfamily protein; K06902 MFS transporter, UMF1 family
SCNpilot_expt_1000_bf_scaffold_1489_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6739..7599
DNA (861bp) protein (287aa)
Beta-lactamase domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRB5_9SPHI
Beta-lactamase {ECO:0000313|EMBL:AHF15990.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Zn-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_1489_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7667..8425
DNA (759bp) protein (253aa)
Membrane protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ74_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17924.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8580..9893
DNA (1314bp) protein (438aa)
OmpA/MotB domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ73_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17923.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
outer membrane protein/peptidoglycan-associated (lipo)protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9967..10989)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ32_9SPHI
Peptidase {ECO:0000313|EMBL:AHF15859.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11004..11402)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ31_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF15858.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11488..12636)
DNA (1149bp) protein (383aa)
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:AHF15857.1}; EC=2.3.1.41 {ECO:0000313|EMBL:AHF15857.1};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain-containing protein; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-ACP synthase n=1 Tax=Niabella aurantiaca RepID=UPI000381EDF7
SCNpilot_expt_1000_bf_scaffold_1489_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12645..13568)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000373C285
Uncharacterized protein {ECO:0000313|EMBL:AHF15856.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13581..14063)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003815CD3
Uncharacterized protein {ECO:0000313|EMBL:AHF15855.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14214..14720
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036CE9CC
Uncharacterized protein {ECO:0000313|EMBL:AHF16546.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14805..15248)
DNA (444bp) protein (148aa)
single-stranded DNA-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI0003795364
Single-stranded DNA-binding protein {ECO:0000256|RuleBase:RU000524}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
single-strand binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_1489_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(15398..15658)
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=1 Tax=Niabella aurantiaca RepID=UPI00035FC305
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
SCNpilot_expt_1000_bf_scaffold_1489_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15817..17526
DNA (1710bp) protein (570aa)
2-oxoglutarate dehydrogenase, E1 subunit; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
2-oxoglutarate dehydrogenase E1 n=1 Tax=Niabella aurantiaca RepID=UPI00037E7B24
2-oxoglutarate dehydrogenase E1 {ECO:0000313|EMBL:AHF14062.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Displaying 18 items

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