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SCNpilot_expt_1000_bf_scaffold_2404_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2404_curated_1
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1810..2415
DNA (606bp) protein (202aa)
TonB-dependent receptor plug n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7Y3_PEDSD
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADY51204.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_2404_curated_2
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2742..3335
DNA (594bp) protein (198aa)
TonB-dependent receptor plug n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7Y3_PEDSD
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADY51204.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_2404_curated_3
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3359..4951
DNA (1593bp) protein (531aa)
RagB/SusD domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7Y4_PEDSD
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ADY51205.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_2404_curated_4
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4982..6283
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7Y5_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY51206.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_2404_curated_5
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6330..8666
DNA (2337bp) protein (779aa)
TonB-dependent receptor; K01729 poly(beta-D-mannuronate) lyase [EC:4.2.2.3]
TonB-dependent receptor n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7Y6_PEDSD
TonB-dependent receptor {ECO:0000313|EMBL:ADY51207.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_2404_curated_6
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8778..10118
DNA (1341bp) protein (447aa)
Chondroitinase-B {ECO:0000313|EMBL:KHJ38740.1}; EC=4.2.2.19 {ECO:0000313|EMBL:KHJ38740.1};; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S7Y7_PEDSD
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2404_curated_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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12088..12351
DNA (264bp) protein (88aa)
Predicted unsaturated glucuronyl hydrolase {ECO:0000313|EMBL:CDM64162.1}; EC=3.2.1.172 {ECO:0000313|EMBL:CDM64162.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glycosyl hydrolase family protein; K15532 unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
glucuronyl hydrolase n=1 Tax=Niabella aurantiaca RepID=UPI000363892E
SCNpilot_expt_1000_bf_scaffold_2404_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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12387..13250
DNA (864bp) protein (288aa)
altronate dehydratase; K01685 altronate hydrolase [EC:4.2.1.7]
altronate hydrolase n=1 Tax=Niabella aurantiaca RepID=UPI00035E522A
Altronate hydrolase {ECO:0000313|EMBL:AHF16657.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Displaying 8 items

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