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SCNpilot_expt_1000_bf_scaffold_1341_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1341_curated_1
unknown

Not on your lists

comp(2..385)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1341_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1986..3077
DNA (1092bp) protein (364aa)
ABC-2 type transporter n=1 Tax=Niabella soli DSM 19437 RepID=H1NK68_9SPHI
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ABC transporter; K09686 antibiotic transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3360..3653
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003820F71
Uncharacterized protein {ECO:0000313|EMBL:AHF18122.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1341_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3896..4438
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF65_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02685.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1341_curated_5
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4603..5151)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00031C5B6E
Fasciclin {ECO:0000313|EMBL:KIA89620.1}; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium jeonii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_6
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5249..6481)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SSS9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO89612.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_7
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6483..7076)
DNA (594bp) protein (198aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCJ9_FLAJ1
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KIX20359.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
CRP/FNR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1341_curated_8
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(7095..7496)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002D3B442
Rrf2 family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_1000_bf_scaffold_1341_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7869..8162
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPA8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17446.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8289..8630
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPA9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17445.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8623..9279
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPB0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17444.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1341_curated_12
R_Omnitrophica_44_11, Omnitrophica, Bacteria

Not on your lists

9665..10366
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI0003669325
transposase IS4 family protein
Tax=RIFCSPLOWO2_02_FULL_Omnitrophica_44_11_curated
SCNpilot_expt_1000_bf_scaffold_1341_curated_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10550..11014)
DNA (465bp) protein (155aa)
NAD(P)(+) transhydrogenase; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL06_NIAKG
SCNpilot_expt_1000_bf_scaffold_1341_curated_14
unknown

Not on your lists

11163..11351
DNA (189bp) protein (63aa)
Flocculin n=1 Tax=Saccharomyces cerevisiae RepID=E9P9G2_YEASX id=5225708 bin=16ft_combo_ws3_JS1 species=Saccharomyces cerevisiae genus=Saccharomyces taxon_order=Saccharomycetales taxon_class=Saccharomycetes phylum=Ascomycota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
SCNpilot_expt_1000_bf_scaffold_1341_curated_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11987..12289)
DNA (303bp) protein (101aa)
pyridine nucleotide transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
Pyridine nucleotide transhydrogenase subunit alpha n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL07_NIAKG
Pyridine nucleotide transhydrogenase subunit alpha {ECO:0000313|EMBL:AEW00846.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1341_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12336..13451)
DNA (1116bp) protein (372aa)
NAD(P)(+) transhydrogenase; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P)(+) transhydrogenase (AB-specific) {ECO:0000313|EMBL:AEW00847.1}; EC=1.6.1.2 {ECO:0000313|EMBL:AEW00847.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NAD(P)(+) transhydrogenase (AB-specific) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL08_NIAKG
SCNpilot_expt_1000_bf_scaffold_1341_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13542..14342)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003755D72
SAM-dependent methyltransferase {ECO:0000313|EMBL:AHF14541.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
O-methyltransferase-like protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14391..14657)
DNA (267bp) protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:AHF14539.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1341_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14700..15191)
DNA (492bp) protein (164aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
dihydrofolate reductase; K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Niabella soli DSM 19437 RepID=H1NM19_9SPHI
SCNpilot_expt_1000_bf_scaffold_1341_curated_20
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15261..16055)
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NM20_9SPHI
SCNpilot_expt_1000_bf_scaffold_1341_curated_21
Leptospira terpstrae, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(16127..16498)
DNA (372bp) protein (124aa)
PF08818 domain protein n=1 Tax=Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639 RepID=N1VN76_9LEPT
PF08818 domain protein {ECO:0000313|EMBL:EMY59883.1}; TaxID=1257025 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16528..17757)
DNA (1230bp) protein (410aa)
L-proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8]
Proline dehydrogenase n=1 Tax=Niabella soli DSM 19437 RepID=H1NKY3_9SPHI
Proline dehydrogenase {ECO:0000313|EMBL:AHF14372.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1341_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17868..18158
DNA (291bp) protein (97aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
glutamyl-tRNA amidotransferase subunit C n=1 Tax=Niabella aurantiaca RepID=UPI0003690B4E
SCNpilot_expt_1000_bf_scaffold_1341_curated_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18163..18870
DNA (708bp) protein (236aa)
ABC transporter n=1 Tax=Niabella aurantiaca RepID=UPI000377345B
Macrolide ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF15549.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
phosphonate-transporting ATPase; K02003 putative ABC transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1341_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19158..19511
DNA (354bp) protein (118aa)
membrane protein n=1 Tax=Niabella aurantiaca RepID=UPI0003658525
Membrane protein {ECO:0000313|EMBL:AHF16829.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB
Displaying 25 items

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