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SCNpilot_expt_1000_bf_scaffold_1491_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1491_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..412
DNA (411bp) protein (137aa)
cell cycle protein n=1 Tax=Niabella aurantiaca RepID=UPI0003701662
Cell cycle protein {ECO:0000313|EMBL:AHF15714.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cell cycle protein; K05837 rod shape determining protein RodA
SCNpilot_expt_1000_bf_scaffold_1491_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

421..1281
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035EE8D8
Uncharacterized protein {ECO:0000313|EMBL:AHF17681.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1283..1855)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUE4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17680.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1491_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1921..3123)
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000380F957
Uncharacterized protein {ECO:0000313|EMBL:AHF15712.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3177..5261
DNA (2085bp) protein (695aa)
TonB-dependent receptor n=1 Tax=Niabella soli DSM 19437 RepID=H1NUE2_9SPHI
TonB-denpendent receptor {ECO:0000313|EMBL:AHF15711.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_6
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5277..5663)
DNA (387bp) protein (129aa)
membrane protein n=1 Tax=Niabella aurantiaca RepID=UPI0003696040
TM2 domain family {ECO:0000313|EMBL:EPR71848.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
TM2 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5650..5946)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUE0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF15709.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_8
unknown

Not on your lists

comp(5966..6115)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1491_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6272..7258)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUD7_9SPHI
S1/P1 Nuclease {ECO:0000313|EMBL:AHF15706.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7358..8527)
DNA (1170bp) protein (390aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA polymerase IV n=1 Tax=Niabella aurantiaca RepID=UPI00035FB581
DNA polymerase IV
SCNpilot_expt_1000_bf_scaffold_1491_curated_11
Chryseobacterium luteum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8688..10415
DNA (1728bp) protein (576aa)
Amino acid/peptide transporter n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VY84_9FLAO
Amino acid transporter {ECO:0000313|EMBL:KFF08016.1}; TaxID=421531 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium luteum.;"
proton-dependent di-tripeptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_expt_1000_bf_scaffold_1491_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


10543..11295
DNA (753bp) protein (251aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Niabella soli DSM 19437 RepID=H1NRA4_9SPHI
SCNpilot_expt_1000_bf_scaffold_1491_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11369..12292
DNA (924bp) protein (308aa)
Phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
2-hydroxyacid dehydrogenase n=1 Tax=Niabella aurantiaca RepID=UPI00037F53EB
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:AHF15982.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1491_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12429..12902
DNA (474bp) protein (158aa)
Transcription elongation factor GreA n=1 Tax=Niabella soli DSM 19437 RepID=H1NRA6_9SPHI
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_expt_1000_bf_scaffold_1491_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13069..13458
DNA (390bp) protein (130aa)
Histidine triad (HIT) protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRA7_9SPHI
HIT family hydrolase {ECO:0000313|EMBL:AHF15984.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation
SCNpilot_expt_1000_bf_scaffold_1491_curated_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13650..14318
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003626F21
Uncharacterized protein {ECO:0000313|EMBL:KIC96039.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_17
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14370..14924)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002F31169
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIA96247.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
SCNpilot_expt_1000_bf_scaffold_1491_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15264..16205)
DNA (942bp) protein (314aa)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, non-repeat region n=1 Tax=Niabella soli DSM 19437 RepID=H1NRF2_9SPHI
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase {ECO:0000313|EMBL:AHF16551.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1491_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16693..17568
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRF1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16550.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
YicC-like domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1491_curated_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17607..18101
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000380B5A6
Uncharacterized protein {ECO:0000313|EMBL:AHF17976.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1491_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18098..19099
DNA (1002bp) protein (334aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036016E8
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_1491_curated_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19145..19846
DNA (702bp) protein (234aa)
transcriptional regulator n=1 Tax=Niabella aurantiaca RepID=UPI00036F5AB9
Transcriptional regulator {ECO:0000313|EMBL:AHF16548.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
two component transcriptional regulator, winged helix family
SCNpilot_expt_1000_bf_scaffold_1491_curated_23
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19847..20422)
DNA (576bp) protein (192aa)
nitroreductase n=1 Tax=Cytophaga aurantiaca RepID=UPI000360D515
Nitroreductase {ECO:0000313|EMBL:AHW60231.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
nitroreductase
SCNpilot_expt_1000_bf_scaffold_1491_curated_24
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20465..21604)
DNA (1140bp) protein (380aa)
Beta-lactamase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XY17_PEDHD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ACU04435.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_1491_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21611..23278)
DNA (1668bp) protein (556aa)
peptidase C45 n=1 Tax=Niabella aurantiaca RepID=UPI0003604FF1
Peptidase C45 {ECO:0000313|EMBL:AHF16541.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Displaying 25 items

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