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SCNpilot_expt_1000_bf_scaffold_3097_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3097_curated_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2..271)
DNA (270bp) protein (90aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
phosphopantothenoylcysteine decarboxylase n=1 Tax=Niabella aurantiaca RepID=UPI00036B78D1
Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:AHF16738.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_3097_curated_2
unknown

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1219..1698
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_3
unknown

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1704..2165
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_4
unknown

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2319..2795
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_5
unknown

Not on your lists

2817..3119
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3048..3389)
DNA (342bp) protein (114aa)
DNA-directed RNA polymerase, omega subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NSV8_9SPHI
DNA-directed RNA polymerase subunit omega {ECO:0000313|EMBL:AHF16739.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA-directed RNA polymerase subunit omega
SCNpilot_expt_1000_bf_scaffold_3097_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3364..4278)
DNA (915bp) protein (305aa)
Outer membrane assembly lipoprotein YfiO n=1 Tax=Niabella soli DSM 19437 RepID=H1NSV9_9SPHI
Outer membrane assembly protein YfiO {ECO:0000313|EMBL:AHF16740.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
outer membrane assembly lipoprotein YfiO; K05807 putative lipoprotein
SCNpilot_expt_1000_bf_scaffold_3097_curated_8
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4406..5116
DNA (711bp) protein (237aa)
glycosyltransferase ycbB; K00786 [EC:2.4.-.-]
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GSL1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH56890.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
SCNpilot_expt_1000_bf_scaffold_3097_curated_9
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

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5128..5511
DNA (384bp) protein (128aa)
Putative uncharacterized protein id=1791253 bin=GWE2_Bacteroidetes_29_8 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein; K09153 hypothetical protein
Tax=GWE2_Bacteroidetes_29_8_curated
SCNpilot_expt_1000_bf_scaffold_3097_curated_10
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

Not on your lists

5653..7707
DNA (2055bp) protein (685aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036B3541
hypothetical protein
Tax=GWE2_Bacteroidetes_29_8_curated
SCNpilot_expt_1000_bf_scaffold_3097_curated_11
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7711..8502)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035D53C7
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDE91120.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
glycosyltransferase, putative teichoic acid biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_3097_curated_12
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

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9153..9470
DNA (318bp) protein (106aa)
Cupin domain protein id=3893029 bin=GWF2_Bacteroidetes_33_38 species=Bacteroides intestinalis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
cupin
Tax=GWF2_Bacteroidetes_33_38_curated
SCNpilot_expt_1000_bf_scaffold_3097_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9502..10305)
DNA (804bp) protein (268aa)
uroporphyrinogen III synthase HEM4; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
uroporphyrinogen-III synthase n=1 Tax=Niabella aurantiaca RepID=UPI000374576B
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:AHF16741.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_3097_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10368..10874)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NT40_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF18042.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3097_curated_15
unknown

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comp(10871..11239)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11302..12618
DNA (1317bp) protein (439aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Queuosine biosynthesis protein; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003755B1F
SCNpilot_expt_1000_bf_scaffold_3097_curated_17
unknown

Not on your lists

comp(12674..12892)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_18
unknown

Not on your lists

13096..13533
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_19
unknown

Not on your lists

13752..14585
DNA (834bp) protein (278aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3097_curated_20
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14593..15231
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2K478_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL68023.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3097_curated_21
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15213..16007
DNA (795bp) protein (265aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VU80_9FLAO
histidine kinase
SCNpilot_expt_1000_bf_scaffold_3097_curated_22
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16004..16645
DNA (642bp) protein (214aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Chryseobacterium sp. CF314 RepID=J2JJG6_9FLAO
Ligand-binding protein SH3 {ECO:0000313|EMBL:KIC65171.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
two component transcriptional regulator, luxr family
SCNpilot_expt_1000_bf_scaffold_3097_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16648..18003)
DNA (1356bp) protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
integral membrane sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NRN2_9SPHI
SCNpilot_expt_1000_bf_scaffold_3097_curated_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18341..19147
DNA (807bp) protein (269aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III, alpha subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NJS7_9SPHI
Displaying 24 items

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