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SCNpilot_expt_1000_bf_scaffold_3810_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3810_curated_1
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1..186
DNA (186bp) protein (62aa)
purine or other phosphorylase 1; K01243 S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WWZ6_9PORP
Nucleosidase {ECO:0000313|EMBL:KFF02986.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
SCNpilot_expt_1000_bf_scaffold_3810_curated_2
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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246..1295
DNA (1050bp) protein (350aa)
O-6-methylguanine DNA methyltransferase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KW95_SOLCM
O-6-methylguanine DNA methyltransferase
O-6-methylguanine DNA methyltransferase {ECO:0000313|EMBL:AFD07887.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_expt_1000_bf_scaffold_3810_curated_3
unknown

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1297..1542
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3810_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1537..4401)
DNA (2865bp) protein (955aa)
excinuclease ABC subunit A n=1 Tax=Niabella aurantiaca RepID=UPI0003707074
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
SCNpilot_expt_1000_bf_scaffold_3810_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4842..5411
DNA (570bp) protein (190aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Niabella soli DSM 19437 RepID=H1NTB9_9SPHI
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHF15602.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RNA polymerase, sigma subunit, ECF family; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_3810_curated_6
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5569..6579)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036AD123
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADZ77209.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_3810_curated_7
unknown

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comp(6730..7125)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3810_curated_8
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7653..10796
DNA (3144bp) protein (1048aa)
collagen-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI000369EC9E
Collagen-binding protein {ECO:0000313|EMBL:AIM38033.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
TonB-dependent receptor plug
SCNpilot_expt_1000_bf_scaffold_3810_curated_9
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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10807..12192
DNA (1386bp) protein (462aa)
starch-binding protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035D2CBB
Starch-binding protein {ECO:0000313|EMBL:AIM38032.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
RagB/SusD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3810_curated_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12177..12695
DNA (519bp) protein (173aa)
starch-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI0003760B1C
Uncharacterized protein {ECO:0000313|EMBL:EKN10807.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RagB/SusD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3810_curated_11
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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12747..13673
DNA (927bp) protein (309aa)
oxidoreductase n=1 Tax=Niabella aurantiaca RepID=UPI000380221F
Oxidoreductase {ECO:0000313|EMBL:ETZ23977.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
oxidoreductase domain-containing protein
Displaying 11 items

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