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SCNpilot_expt_1000_bf_scaffold_1048_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1048_curated_1
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..230
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037D199A
ATPase {ECO:0000313|EMBL:KFC37988.1}; TaxID=238 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica (Chryseobacterium meningosepticum).;"
activator of Hsp90 ATPase 1 family protein
SCNpilot_expt_1000_bf_scaffold_1048_curated_2
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(282..2297)
DNA (2016bp) protein (672aa)
Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase n=1 Tax=Riemerella anatipestifer RA-CH-1 RepID=J9R790_RIEAN
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase
Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase {ECO:0000313|EMBL:AFR36353.1}; TaxID=1228997 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer RA-CH-1.;"
SCNpilot_expt_1000_bf_scaffold_1048_curated_3
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2496..2723)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SLX2_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFC20225.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1048_curated_4
Flavobacteriaceae bacterium 3519-10, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2783..4360)
DNA (1578bp) protein (526aa)
Major facilitator superfamily MFS_1 n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X4X4_FLAB3
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACU07462.1}; TaxID=531844 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae.;" source="Flavobacteriaceae bacterium (strain 3519-10).;"
SCNpilot_expt_1000_bf_scaffold_1048_curated_5
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4552..6954
DNA (2403bp) protein (801aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KT10_HALH1
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:AEE50080.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_1000_bf_scaffold_1048_curated_6
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6960..8654)
DNA (1695bp) protein (565aa)
Signal transduction histidine kinase n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4APM3_FLELS
Sensory box histidine kinase/response regulator {ECO:0000313|EMBL:GAL61654.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_1048_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8727..9851)
DNA (1125bp) protein (375aa)
FO synthase, subunit 2 n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ56_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16361.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
FO synthase subunit 2
SCNpilot_expt_1000_bf_scaffold_1048_curated_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9954..11255
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000378ECE4
Signal protein PDZ {ECO:0000313|EMBL:AHF16390.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PDZ/DHR/GLGF domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1048_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


11317..12360
DNA (1044bp) protein (348aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Niabella aurantiaca RepID=UPI00036F1EDF
SCNpilot_expt_1000_bf_scaffold_1048_curated_10
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12527..13084
DNA (558bp) protein (186aa)
NADPH-dependent FMN reductase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SDQ1_PEDSD
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ADY50778.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_1048_curated_11
unknown

Not on your lists

comp(13088..13195)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1048_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13260..13661)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NR33_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16521.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1048_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13739..15274)
DNA (1536bp) protein (512aa)
glucosamine-6-sulfatase (EC:3.1.6.1)
sulfatase n=1 Tax=Niabella aurantiaca RepID=UPI000375568C
Sulfatase {ECO:0000313|EMBL:AHF16210.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1048_curated_14
unknown

Not on your lists

comp(15426..15755)
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1048_curated_15
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16044..16991
DNA (948bp) protein (316aa)
MORN repeat-containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EID6_RUNSL
MORN repeat-containing protein
MORN repeat-containing protein {ECO:0000313|EMBL:AEI51479.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_1048_curated_16
unknown

Not on your lists

comp(17036..17470)
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1048_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17603..20452)
DNA (2850bp) protein (950aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase, large subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NS52_9SPHI
SCNpilot_expt_1000_bf_scaffold_1048_curated_18
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20774..21397)
DNA (624bp) protein (208aa)
Putative uncharacterized protein id=3444462 bin=GWC2_Syntrophus__56_31 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
putative glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_1048_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21385..29472)
DNA (8088bp) protein (2696aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003779323
NdvB {ECO:0000313|EMBL:AHF16256.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_1048_curated_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29739..31754
DNA (2016bp) protein (672aa)
TonB-dependent receptor n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2F1C0_EMTOG
Uncharacterized protein {ECO:0000313|EMBL:KIC89584.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_1048_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31969..32571)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036BCE6E
Uncharacterized protein {ECO:0000313|EMBL:AHF17175.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1048_curated_22
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32684..33820)
DNA (1137bp) protein (379aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FDB7_FLAJ1
peroxiredoxin
Uncharacterized protein {ECO:0000313|EMBL:KIA96963.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
Displaying 22 items

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