ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2555_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2555_curated_1
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

558..1109
DNA (552bp) protein (184aa)
Membrane-bound dehydrogenase domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZ74_PEDHD
membrane-bound dehydrogenase domain-containing protein
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:ACU02556.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_2555_curated_2
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1121..1504
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036EBDEF
high-potential iron-sulfur protein
High-potential iron-sulfur protein {ECO:0000256|RuleBase:RU000620}; Short=HiPIP {ECO:0000256|RuleBase:RU000620};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_2555_curated_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1508..1882
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PV80_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:GAO41682.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2555_curated_4
Bacteroidetes bacterium oral taxon 272, Bacteroidetes, Bacteria

Not on your lists

2180..3547
DNA (1368bp) protein (456aa)
Spore coat polysaccharide biosynthesis protein SpsC family protein n=1 Tax=Bacteroidetes bacterium oral taxon 272 str. F0290 RepID=S8FL80_9BACT
Spore coat polysaccharide biosynthesis protein SpsC family protein {ECO:0000313|EMBL:EPT34688.1}; TaxID=888054 species="Bacteria; Bacteroidetes.;" source="Bacteroidetes bacterium oral taxon 272 str. F0290.;"
glutamine--scyllo-inositol transaminase
SCNpilot_expt_1000_bf_scaffold_2555_curated_5
unknown

Not on your lists

3864..5297
DNA (1434bp) protein (478aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2555_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5367..6065
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036E3FC0
Uncharacterized protein {ECO:0000313|EMBL:AHF17190.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
G-D-S-L family lipolytic protein
SCNpilot_expt_1000_bf_scaffold_2555_curated_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6129..7439)
DNA (1311bp) protein (437aa)
O-antigen polymerase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VM68_9SPHI
O-antigen polymerase {ECO:0000313|EMBL:EFK58073.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2555_curated_8
unknown

Not on your lists

comp(7497..7937)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI0003783D6F
SCNpilot_expt_1000_bf_scaffold_2555_curated_9
unknown

Not on your lists

comp(7940..8380)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI0003783D6F
SCNpilot_expt_1000_bf_scaffold_2555_curated_10
unknown

Not on your lists

comp(8398..8679)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037B76A9
SCNpilot_expt_1000_bf_scaffold_2555_curated_11
unknown

Not on your lists

comp(8746..9114)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2555_curated_12
Jejuia pallidilutea, Jejuia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9145..9483)
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL89561.1}; TaxID=504487 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Jejuia.;" source="Jejuia pallidilutea.;"
SCNpilot_expt_1000_bf_scaffold_2555_curated_13
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9516..10319)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035E669D
L-fucose-proton symporter {ECO:0000313|EMBL:KHJ38140.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
glucose/galactose transporter
Displaying 13 items

View Taxonomy