ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_1000_bf_scaffold_5851_curated_15

Organism: scnpilot_dereplicated_Sphingobacteriales_5

near complete RP 46 / 55 MC: 2 BSCG 41 / 51 MC: 1 ASCG 9 / 38
Location: comp(17203..19368)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036E9037 similarity UNIREF
DB: UNIREF100
  • Identity: 64.4
  • Coverage: 711.0
  • Bit_score: 1009
  • Evalue 1.90e-291
Uncharacterized protein {ECO:0000313|EMBL:KIA93494.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.8
  • Coverage: 719.0
  • Bit_score: 631
  • Evalue 1.10e-177
TonB-dependent receptor plug similarity KEGG
DB: KEGG
  • Identity: 40.4
  • Coverage: 696.0
  • Bit_score: 547
  • Evalue 4.80e-153

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedobacter kyungheensis → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 2166
CTTCAAAAAAGCAACAACCCCAGCCTCGCCGATACCAATGATGCAAGAACGAGATTGCCTCTTAAAGGTGTTTCTCAAGCGCCGTTGACCAGCCTTCAGCAATACATAAAAGGAAATGCTGCCGGTGTGTTCGTAAGAGAGGGCGATGGAGAAGCGGGGGCAGAACAGGCAATGTTCATAAGGGGTTTAAGTACTCCCCTTTTCAGTAAACAGGACCTCTATAGCGTACAACCAATTGTTTACCTCAATGGCGTTCCGCTAATCCAGGACAACGCATTTACCTATAACATTCAGCGATATGATTTTAACAAGATAGGTTCTGCTACCAATCTTTTGTCGATAATTGACGTAAACAACATTGGCAGCATAGAAATATTGAAAACGCCCGCTGATCTTGCGAAACTTGGACCGCTTGCTTCAAACGGAGCTATTTGGATTACGACAAAAAATGCCATGTCACTGCCCAAGCCAATTGTTAATGTGGAATCTTATATAGGCGTACTTCAACCTCCGAAAATTGAAACGATTAACGCAGACTATGAAAACAATTTCAGGTCACCGTTCTACGAAAAATTTGCGACTGAAGCACAAAAAGCAGATTATCCCGTATACGTACGCAACAGTTTTGACCCCAACTATTACGGCCCTTCTAATTGGAACGACATTTATTATAAAGCAAAACCAATTTATTATTTAGGACTGGGATTACTGGGAGGTAACGAAAGGGCTAATTTTCGATTTAACATCAGCGACACAAAAGACCGCAATTTTGACGCAACCAGTTTCAACCGTTATGCCATCGCCTTTGGGATTAATATGATACCGCTTAAATGGCTCACGATTTCAAGTAATTTTAATGCCACTCGCATTAACCGCGACCGAAACCATAACCTGCGGGACCGGTTTGCCGAAGCACGTTTTGTTCCCGATCTTTCAAACCCTCTTTCCCCCAATAAAGAATCTTATGACAATTTCCTTAAAAAATATCAGGGGTCTATTGATCAAAATGTAAATAACTCCTTTGTGGGAGGGTTCAATGCCCTGGCAAATTTTGGAAATCTGAGTATTAGAAGTACTCTTTCTATTGATTATGAAGAATCCCATCGTAATGTTTTTTGGGGTAAACCATTAATGGACAATAACAGCTTTCTCTCCACCTATTTTGGGTTTAACCAGCGTAGTGCTATTCACAATTCTATAAATTATAATATCCCGGTAGCTAACAACTCCCAAAACATTCAGTTAGAGGCAGGCCAAAACTACGTGTCAGATTTTTATAAGTACGATTACGTAATTGCCTATAACAGCCCCAACGACTTTATCAAGGTTAAAGAAATTTATTTAAACGCGGGCAGTTATGTAAATCGCAATGATATGTTTGGATACCCTTTCAGCGATAACTTAAAGGCCAACCTGTCTTCTTTTTACGGCCGACTGGGATATTCATACAAAAAGATTGTACAACTGAACGGCGTTGTTAAATATGACGGCTATTCAAGTTTCTCCGCAACGGACAGGTGGTTGCTGACGCCTGCCGCCAGCGCCCGCATCAATATCCATGAATTGGTTCCCTCAGATGTGTTCAACACGTTTGCCGTAAGGGCATCATGGGGAGTTTTTGGCAAACTAATTCAGGATAACCGGTTCCGCATCGGGCCACAATACCGGGTAGATATGGGCTACTCCGACGAACCGGTTCTGGGTAGCTACGGCGGCGACCCGGGTCTTTCGCAGCCCTATTCATTTGGCTGGATAGCGAGATATTACAATTGGCCTTACAGCGAAAAATATAACTTAGGCACCGATCTGGGATTTCTTAATAACCGCTTAATGCTGGGCCTGGACCTCTACCAAAACACCGATAAAAACATGATTGTGCCCACCCCTATTGCGGCAGAAAATGGGTTTGCCTATAAATATGTGCAAGGGATGTCGGTAAGGAATCAAGGTGTAAATTTTGACTTAACAGGACAAATTTTAGATCGTGCGGGCGGCCTTAGCTGGATGCTAAACACAAATTTCAGCTGGAACAGCAACAAACTGGTAAAATTGCCGTACAACCTTTCCAGCGTTCAATACGGAAGTAAGAAAATTGAAATCGGCAAACCTGTTGACAGTTATTGGGTTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTGTAG
PROTEIN sequence
Length: 722
LQKSNNPSLADTNDARTRLPLKGVSQAPLTSLQQYIKGNAAGVFVREGDGEAGAEQAMFIRGLSTPLFSKQDLYSVQPIVYLNGVPLIQDNAFTYNIQRYDFNKIGSATNLLSIIDVNNIGSIEILKTPADLAKLGPLASNGAIWITTKNAMSLPKPIVNVESYIGVLQPPKIETINADYENNFRSPFYEKFATEAQKADYPVYVRNSFDPNYYGPSNWNDIYYKAKPIYYLGLGLLGGNERANFRFNISDTKDRNFDATSFNRYAIAFGINMIPLKWLTISSNFNATRINRDRNHNLRDRFAEARFVPDLSNPLSPNKESYDNFLKKYQGSIDQNVNNSFVGGFNALANFGNLSIRSTLSIDYEESHRNVFWGKPLMDNNSFLSTYFGFNQRSAIHNSINYNIPVANNSQNIQLEAGQNYVSDFYKYDYVIAYNSPNDFIKVKEIYLNAGSYVNRNDMFGYPFSDNLKANLSSFYGRLGYSYKKIVQLNGVVKYDGYSSFSATDRWLLTPAASARINIHELVPSDVFNTFAVRASWGVFGKLIQDNRFRIGPQYRVDMGYSDEPVLGSYGGDPGLSQPYSFGWIARYYNWPYSEKYNLGTDLGFLNNRLMLGLDLYQNTDKNMIVPTPIAAENGFAYKYVQGMSVRNQGVNFDLTGQILDRAGGLSWMLNTNFSWNSNKLVKLPYNLSSVQYGSKKIEIGKPVDSYWVYXXXXXXXXXXL*