ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4843_curated_6

Organism: scnpilot_dereplicated_Sphingobacteriales_5

near complete RP 46 / 55 MC: 2 BSCG 41 / 51 MC: 1 ASCG 9 / 38
Location: comp(4521..5522)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.9
  • Coverage: 333.0
  • Bit_score: 611
  • Evalue 7.40e-172
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 85.2
  • Coverage: 332.0
  • Bit_score: 574
  • Evalue 2.20e-161
DNA-directed RNA polymerase subunit alpha n=1 Tax=Niabella soli DSM 19437 RepID=H1NUG4_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 91.9
  • Coverage: 333.0
  • Bit_score: 611
  • Evalue 5.20e-172

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niabella soli → Niabella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1002
ATGGCAATTTTAAATTTTCAGCAACCCGATAAAATTATTCTGCAGAAGGCTTCTGATTTTGAAGCCCAGTTTGAGTTCCGCCCGTTGGAACCAGGCTATGCAGTAACAATTGGTAATGCGCTTCGTCGTGTTTTGTTAAACTCCCTAGAAGGCTATGCCATTGTGGGTATCAAAATAGAAGGTGTTGACCACGAGTTTGCAACCATCAAAGGAATCAGCGAAGATCTCGTAGAAATTATTTTAAACCTGAAACAGGTTCGCTTTAAAAAAATTGTTGATCACGATGTGACTAACGAAAAAATTTCGTTGTCGGTTAAAAATCAAACTGAATTTACGGCGGGAATGATTGGCGAAAACACACAGTCTTTCCAAATTATGAACCCTGAATTAGTGATCTGCACTTTGGATTCTTCTACAAAACTGGATATTGAATTAACCATTGGTAAAGGCCGCGGCTATGTACCTTCTGATGACAATCAGGTTAAGGACGCACCTGTTGGTTATATTCCTATCGATTCTATTTATACGCCAATCAAGAACGTAAAATACGCCGTTGAAAATACGCGTGTGGAACAACGCACCGACTATGAAAAATTAGTTATGGATGTTGTTACAGACGGTACTATCCACCCTGAAGAAGCGGTAAAACAAGCAAGCCGCATCCTTATTCAGCACCTGATGATCATTACTGATGAAAACATTACTTTCGACAATAAAGAAGAAAAGAAAGAAGACATCGTTGATGAGCAAACGTTGCAATTACGCAAGATGTTGAAAACTCCTTTGGAAGATTTAGATCTTTCAGTACGTGCATTCAACTGCCTGAAAGCAGCGAAAATCAATTCTTTAAGCGAGCTGGTTCAATACGAGCAGGAAGACCTGATGAAGTTCAGAAACTTTGGCCAGAAATCTCTTTCTGAAATTGAGCAGGTGTTAAATGAAAGAGGCCTCGGCTTTGGCATGGACCTTCAGAAATTAGGGATCGATAAAGATGATTATTAA
PROTEIN sequence
Length: 334
MAILNFQQPDKIILQKASDFEAQFEFRPLEPGYAVTIGNALRRVLLNSLEGYAIVGIKIEGVDHEFATIKGISEDLVEIILNLKQVRFKKIVDHDVTNEKISLSVKNQTEFTAGMIGENTQSFQIMNPELVICTLDSSTKLDIELTIGKGRGYVPSDDNQVKDAPVGYIPIDSIYTPIKNVKYAVENTRVEQRTDYEKLVMDVVTDGTIHPEEAVKQASRILIQHLMIITDENITFDNKEEKKEDIVDEQTLQLRKMLKTPLEDLDLSVRAFNCLKAAKINSLSELVQYEQEDLMKFRNFGQKSLSEIEQVLNERGLGFGMDLQKLGIDKDDY*