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SCNpilot_expt_1000_bf_scaffold_4843_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4843_curated_1
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1..702)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MAT4_9SPHI
Arylsulfatase {ECO:0000313|EMBL:AIM35576.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
steryl-sulfatase
SCNpilot_expt_1000_bf_scaffold_4843_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(908..1681)
DNA (774bp) protein (258aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tryptophan synthase subunit alpha; K01695 tryptophan synthase alpha chain [EC:4.2.1.20]
tryptophan synthase subunit alpha n=1 Tax=Niabella aurantiaca RepID=UPI00035FC85A
SCNpilot_expt_1000_bf_scaffold_4843_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1721..2911)
DNA (1191bp) protein (397aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain [EC:4.2.1.20]
Tryptophan synthase beta chain n=1 Tax=Niabella soli DSM 19437 RepID=H1NSS7_9SPHI
SCNpilot_expt_1000_bf_scaffold_4843_curated_4
unknown

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3119..3316
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4843_curated_5
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3485..4267)
DNA (783bp) protein (261aa)
50S ribosomal protein L17 n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G029_9SPHI
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_expt_1000_bf_scaffold_4843_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4521..5522)
DNA (1002bp) protein (334aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Niabella soli DSM 19437 RepID=H1NUG4_9SPHI
SCNpilot_expt_1000_bf_scaffold_4843_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(5617..6219)
DNA (603bp) protein (201aa)
30S ribosomal protein S4 n=1 Tax=Niabella soli DSM 19437 RepID=H1NUG5_9SPHI
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_expt_1000_bf_scaffold_4843_curated_8
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6463..6864)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Niabella aurantiaca RepID=UPI00036DE442
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
SCNpilot_expt_1000_bf_scaffold_4843_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7029..7409)
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Niabella aurantiaca RepID=UPI00035F8657
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_expt_1000_bf_scaffold_4843_curated_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7444..7560)
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIA2_NIAKG
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
SCNpilot_expt_1000_bf_scaffold_4843_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7586..7807)
DNA (222bp) protein (74aa)
translation initiation factor IF-1 n=1 Tax=Niabella aurantiaca RepID=UPI00036D4AD7
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
translation initiation factor IF-1; K02518 translation initiation factor IF-1
SCNpilot_expt_1000_bf_scaffold_4843_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8065..8460)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003698140
Uncharacterized protein {ECO:0000313|EMBL:AHF17688.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4843_curated_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8560..9072
DNA (513bp) protein (171aa)
phosphodiesterase n=1 Tax=Niabella aurantiaca RepID=UPI00036A3353
metallophosphoesterase; K07095
Metallophosphoesterase {ECO:0000313|EMBL:AEW00736.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_4843_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9210..9473)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037E7877
Eukaryotic cytochrome b561 {ECO:0000313|EMBL:AHF15737.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
Displaying 14 items

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