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SCNpilot_expt_1000_bf_scaffold_1708_curated_4

Organism: scnpilot_dereplicated_Sphingobacteriales_5

near complete RP 46 / 55 MC: 2 BSCG 41 / 51 MC: 1 ASCG 9 / 38
Location: comp(1409..1963)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT1_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 68.9
  • Coverage: 177.0
  • Bit_score: 266
  • Evalue 2.30e-68
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 68.9
  • Coverage: 177.0
  • Bit_score: 266
  • Evalue 7.20e-69
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03102.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.9
  • Coverage: 177.0
  • Bit_score: 266
  • Evalue 3.20e-68

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 555
ATGGGTAATCAACCGGTTGGCGATGACGAACTATTGTCCCTTTTTCGTTCTGAAGCGACGAAAGAAAGGGCATTTGCGCAAATTGTAGACCGATATAAAGAAAAACTGTATTGGCATATCCGGCGGCTGGTAGTGGTACATGAAGATGCTGACGACGTACTCCAGAATACCTTCATTAAAGTTTGGAAAGGGCTCAATACTTTCAGGGAAGACAGCAGGCTTTTTACATGGTTATACCGTATTGCCACAAACGAATGTCTTACACATCTTGAAAAGCTGAAAAGAAGCCGGACCGCCAGCCTCAACAATGAAGAAAGTTATCTGGATAATAAGATACGGGCTGATGAATATTTTGATGCCGGTAAATTGGAGTGGAAACTACAGCTCGCCATTCAGTCATTGCCCGAACAGCAGCGGGTCGTGTTCAACCTGCGATATTTTGACGAAATGCCCTACAAAGAAATGAGCCAGATACTTAAGGTTACCGAAGGTTCGTTAAAAGCAAGTTATCACCACGCAGCTAAAAAAATTGAGGATTATTTACTAAATCGTTAA
PROTEIN sequence
Length: 185
MGNQPVGDDELLSLFRSEATKERAFAQIVDRYKEKLYWHIRRLVVVHEDADDVLQNTFIKVWKGLNTFREDSRLFTWLYRIATNECLTHLEKLKRSRTASLNNEESYLDNKIRADEYFDAGKLEWKLQLAIQSLPEQQRVVFNLRYFDEMPYKEMSQILKVTEGSLKASYHHAAKKIEDYLLNR*