ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1708_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1708_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..243
DNA (243bp) protein (81aa)
beta-lactamase n=1 Tax=Niabella aurantiaca RepID=UPI00037BF106
beta-lactamase
Beta-lactamase domain protein {ECO:0000313|EMBL:AEW03099.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1708_curated_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(407..781)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035C456A
Uncharacterized protein {ECO:0000313|EMBL:AHF17686.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_1708_curated_3
unknown

Not on your lists

comp(784..1374)
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1708_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1409..1963)
DNA (555bp) protein (185aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT1_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03102.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1708_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2012..3304)
DNA (1293bp) protein (431aa)
ABC transporter permease n=1 Tax=Niabella aurantiaca RepID=UPI000381D0A4
ABC transporter permease {ECO:0000313|EMBL:AHF16098.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_1708_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3380..3733)
DNA (354bp) protein (118aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NT13_9SPHI
SCNpilot_expt_1000_bf_scaffold_1708_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5141..6919)
DNA (1779bp) protein (593aa)
DNA mismatch repair protein MutS domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPZ3_9SPHI
DNA mismatch repair protein {ECO:0000313|EMBL:AHF15827.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
mutS; DNA mismatch repair protein
SCNpilot_expt_1000_bf_scaffold_1708_curated_8
unknown

Not on your lists

comp(7212..7436)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1708_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7476..8516)
DNA (1041bp) protein (347aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tRNA-dihydrouridine synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NV66_9SPHI
tRNA-U20-dihydrouridine synthase
SCNpilot_expt_1000_bf_scaffold_1708_curated_10
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8603..10045)
DNA (1443bp) protein (481aa)
alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
Alkaline phosphatase {ECO:0000313|EMBL:ADZ79445.1}; EC=3.1.3.1 {ECO:0000313|EMBL:ADZ79445.1};; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Alkaline phosphatase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C1U5_SPHS2
SCNpilot_expt_1000_bf_scaffold_1708_curated_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10192..11340)
DNA (1149bp) protein (383aa)
arginase n=1 Tax=Niabella aurantiaca RepID=UPI00037386B1
Arginase {ECO:0000313|EMBL:AHF16107.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Arginase/agmatinase/formiminoglutamase
SCNpilot_expt_1000_bf_scaffold_1708_curated_12
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11635..11949
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7XIS8_9BACT
Plasmid stabilization protein {ECO:0000313|EMBL:AHW61340.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1708_curated_13
unknown

Not on your lists

11953..12402
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1708_curated_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12542..13780
DNA (1239bp) protein (413aa)
peptidase M16 n=1 Tax=Niabella aurantiaca RepID=UPI0003817E87
Peptidase M16 {ECO:0000313|EMBL:AHF16374.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M16 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1708_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13805..14467)
DNA (663bp) protein (221aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ71_9SPHI
Regulator {ECO:0000313|EMBL:AHF16373.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
response regulator receiver
SCNpilot_expt_1000_bf_scaffold_1708_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14481..15488)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003820E44
Histidine kinase {ECO:0000313|EMBL:AHF16372.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
histidine kinase internal subunit
SCNpilot_expt_1000_bf_scaffold_1708_curated_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15633..16907
DNA (1275bp) protein (425aa)
peptidase M16 n=1 Tax=Niabella aurantiaca RepID=UPI00035F5BC1
Peptidase M16 {ECO:0000313|EMBL:AHF16349.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase M16 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1708_curated_18
unknown

Not on your lists

comp(16956..17150)
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying 18 items

View Taxonomy