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SCNpilot_expt_500_bf_scaffold_99_curated

Search features with annotation key words

Displaying items 1-30 of 201 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_99_curated_1
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..2210
DNA (2208bp) protein (736aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUP2_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:KFC20964.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_99_curated_2
unknown

Not on your lists

2240..2596
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_99_curated_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2706..3617
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSI0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF15563.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_99_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3586..4656)
DNA (1071bp) protein (357aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=2 Tax=Niabella soli DSM 19437 RepID=H1NJR1_9SPHI
SCNpilot_expt_500_bf_scaffold_99_curated_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4734..5462
DNA (729bp) protein (243aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Nia
Octanoyltransferase; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
octanoyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI00036A5F1C
SCNpilot_expt_500_bf_scaffold_99_curated_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5537..6259)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003656FA9
Uncharacterized protein {ECO:0000313|EMBL:AHF17223.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_99_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6315..7199)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000379190C
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000313|EMBL:AHF14578.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
putative D-cysteine desulfhydrase (DcyD)
SCNpilot_expt_500_bf_scaffold_99_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7251..8159
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI69_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00686.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_99_curated_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8422..9543)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000382647B
Uncharacterized protein {ECO:0000313|EMBL:AHF17050.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidase S1 and S6 chymotrypsin/Hap
SCNpilot_expt_500_bf_scaffold_99_curated_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9536..10111)
DNA (576bp) protein (192aa)
RNA polymerase subunit sigma-70 n=1 Tax=Niabella aurantiaca RepID=UPI00037F55E1
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:KIC93361.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ECF subfamily RNA polymerase sigma-24 subunit
SCNpilot_expt_500_bf_scaffold_99_curated_11
unknown

Not on your lists

10265..10477
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_99_curated_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10611..12284
DNA (1674bp) protein (558aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
DEAD/DEAH box helicase n=1 Tax=Niabella aurantiaca RepID=UPI0003650548
DEAD/DEAH box helicase {ECO:0000313|EMBL:AHF14145.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_500_bf_scaffold_99_curated_13
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12473..13303
DNA (831bp) protein (277aa)
Prephenate dehydratase; K04518 prephenate dehydratase [EC:4.2.1.51]
Prephenate dehydratase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJM2_NIAKG
Chorismate mutase {ECO:0000313|EMBL:KIC91394.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
SCNpilot_expt_500_bf_scaffold_99_curated_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13312..14466
DNA (1155bp) protein (385aa)
LL-diaminopimelate aminotransferase n=1 Tax=Niabella aurantiaca RepID=UPI00037695DB
Uncharacterized protein {ECO:0000313|EMBL:KIC91395.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
class I and II aminotransferase
SCNpilot_expt_500_bf_scaffold_99_curated_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14456..15325
DNA (870bp) protein (290aa)
prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12]
Prephenate dehydrogenase n=1 Tax=Niabella soli DSM 19437 RepID=H1NJQ7_9SPHI
Prephenate dehydrogenase {ECO:0000313|EMBL:AHF14168.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_500_bf_scaffold_99_curated_16
unknown

Not on your lists

15322..15825
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_99_curated_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15880..16968
DNA (1089bp) protein (363aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; K04516 chorismate mutase [EC:5.4.99.5]
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL8_NIAKG
Cytochrome C4 {ECO:0000313|EMBL:KIC94223.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_500_bf_scaffold_99_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16989..18017
DNA (1029bp) protein (343aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
3-dehydroquinate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL6_NIAKG
SCNpilot_expt_500_bf_scaffold_99_curated_19
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18033..19322
DNA (1290bp) protein (430aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Pseudomonas putida RepID=Q683S1_PSEPU
SCNpilot_expt_500_bf_scaffold_99_curated_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19439..20452
DNA (1014bp) protein (338aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NJQ3_9SPHI
SCNpilot_expt_500_bf_scaffold_99_curated_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20477..20782
DNA (306bp) protein (102aa)
Gll2762 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NGX5_GLOVI
Uncharacterized protein {ECO:0000313|EMBL:KIC91401.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_99_curated_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20792..21091
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00760.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_99_curated_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21112..21858)
DNA (747bp) protein (249aa)
peptidase M15D vanX D-ala-D-ala dipeptidase; K08641 D-alanyl-D-alanine dipeptidase [EC:3.4.13.22]
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Peptidase M15D vanX D-ala-D-ala dipeptidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJL2_NIAKG
SCNpilot_expt_500_bf_scaffold_99_curated_24
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21927..23600
DNA (1674bp) protein (558aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM94_CHIPD
Putative L,D-transpeptidase {ECO:0000313|EMBL:GAO43278.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_expt_500_bf_scaffold_99_curated_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

23718..25049
DNA (1332bp) protein (444aa)
OmpA/MotB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQY6_NIAKG
OmpA/MotB domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_99_curated_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25238..25996
DNA (759bp) protein (253aa)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
methionine aminopeptidase n=1 Tax=Pontibacter roseus RepID=UPI000367BFA1
SCNpilot_expt_500_bf_scaffold_99_curated_27
unknown

Not on your lists

comp(25883..26101)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_99_curated_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26122..27333)
DNA (1212bp) protein (404aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
succinyl-CoA ligase subunit beta; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
malate--CoA ligase subunit beta n=1 Tax=Niabella aurantiaca RepID=UPI000360A947
SCNpilot_expt_500_bf_scaffold_99_curated_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

27427..28242
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TN49_NIAKG
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_99_curated_30
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28299..29123
DNA (825bp) protein (275aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
purine nucleoside phosphorylase I; K03783 purine-nucleoside phosphorylase [EC:2.4.2.1]
Purine nucleoside phosphorylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NK23_9SPHI
Displaying items 1-30 of 201 in total

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