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SCNpilot_cont_1000_p_scaffold_59_curated_11

Organism: scnpilot_dereplicated_Sphingobacteriales_4

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: 10106..10705

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDW3_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 37.0
  • Coverage: 173.0
  • Bit_score: 118
  • Evalue 8.40e-24
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EHQ24303.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 37.0
  • Coverage: 173.0
  • Bit_score: 118
  • Evalue 1.20e-23
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 33.7
  • Coverage: 193.0
  • Bit_score: 116
  • Evalue 7.60e-24

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Taxonomy

Mucilaginibacter paludis → Mucilaginibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 600
TTGGCGTTCTCGTCGCTCCATAATGAAAAGGTGATCCTCCGGGCATTGTCCGCAAGTGAGGAAAAGGCATTCCGGAAACTATACGACCATTATGCCGAAAAAGTATATTCAGTAGCTCTGCTCCATCTTAAACAGCCGGAACTGGCTGAAGACCTTGTCCAGACTGTTTTCCTCAAACTATGGGAATGCAGGGATGAACTGGACGGGATACAATCCTTCGCCGCCTGGTTTTACACGCTGACACGCAATACCATCATCTCCATCCTGCGCAAACAAGGCACGCAGGAAAACTATCTTCATTTCCTGCAGCAACGGTTTGGCCTTCTGCCTGCCCATCCTGAACAGGACATGGTCCGCAAGGAACAGCTGCAGCTCATACGCCGGGGCATCGAACAGCTGAGCGCCCAGCAGCGGACAGCTTTCACCCTGCAATGCGACGAAGGCCTCAGCTATAAGCTCATCGGCGAGCGCATGGGCATCTCACCCAACACCGTACGCGTTCACCTGTTCAAGGCAATGGAATCCCTCCGCCGGTTTGTGCAAACCCACATTGACGATAGCTACTTCATTGTTTGTCTTTCTTTTCTTGCCTGTCTGTAA
PROTEIN sequence
Length: 200
LAFSSLHNEKVILRALSASEEKAFRKLYDHYAEKVYSVALLHLKQPELAEDLVQTVFLKLWECRDELDGIQSFAAWFYTLTRNTIISILRKQGTQENYLHFLQQRFGLLPAHPEQDMVRKEQLQLIRRGIEQLSAQQRTAFTLQCDEGLSYKLIGERMGISPNTVRVHLFKAMESLRRFVQTHIDDSYFIVCLSFLACL*