name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_411_curated_1
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(104..1315)
|
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4F3_POLGS
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1749..2504)
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP36_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65675.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_3
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2753..3502)
|
Transcriptional regulatory protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C9T2_9SPHN
Transcriptional regulatory protein {ECO:0000313|EMBL:EIZ80657.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3698..4105)
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP37_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65676.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4423..5214
|
CheY-like response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP38_9SPHN
chemotaxis protein CheY
CheY-like response regulator {ECO:0000313|EMBL:BAK65677.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5236..6894)
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP39_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65678.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6984..7487
|
DNA protection during starvation protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP40_9SPHN
DNA protection during starvation protein; K04047 starvation-inducible DNA-binding protein
DNA protection during starvation protein {ECO:0000313|EMBL:BAK65679.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7509..7751
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP41_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65680.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7729..8322
|
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP42_9SPHN
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAK65681.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8385..8765
|
Putative response regulator receiver protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP43_9SPHN
putative response regulator receiver protein
Putative response regulator receiver protein {ECO:0000313|EMBL:BAK65682.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8835..9104
|
transglycosylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5EE94
Transglycosylase {ECO:0000313|EMBL:AIT05150.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
transglycosylase-associated protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9467..11758)
|
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP44_9SPHN
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65683.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11927..14020)
|
Putative bacteriocin processing/transport ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP45_9SPHN
putative bacteriocin processing/transport ATP-binding protein; K13409 ATP-binding cassette, subfamily B, bacterial RaxB
Putative bacteriocin processing/transport ATP-binding protein {ECO:0000313|EMBL:BAK65684.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_14
unknown
|
Not on your lists |
comp(14017..14508)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_411_curated_15
unknown
|
Not on your lists |
comp(14744..14848)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_411_curated_16
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15693..17789
|
TonB-dependent siderophore receptor n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IHI8_BEII9
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34134.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent siderophore receptor
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_17
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17786..18628
|
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00038254C0
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34465.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_18
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18966..20696
|
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000378FDB3
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:EIZ80942.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
cytochrome c biogenesis protein, transmembrane region
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_19
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20772..21950
|
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4507F
Uncharacterized protein {ECO:0000313|EMBL:EQA99316.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_20
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21947..23284
|
polysaccharide biosynthesis protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32989
Polysaccharide biosynthesis family protein {ECO:0000313|EMBL:EMD82260.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_21
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23308..24057)
|
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C6R2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79155.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_22
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24054..24956)
|
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T2J2_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ70813.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24953..25945)
|
diacylglycerol kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B461CA
Uncharacterized protein {ECO:0000313|EMBL:AIT08163.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_24
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26218..27345
|
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B3CA93
Uncharacterized protein {ECO:0000313|EMBL:KHL26685.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27421..28095)
|
Tight adherence protein TadE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIF0_9SPHN
tight adherence protein TadE
Tight adherence protein TadE {ECO:0000313|EMBL:BAK67073.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28092..28790)
|
Tight adherence protein TadE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIE9_9SPHN
tight adherence protein TadE
Tight adherence protein TadE {ECO:0000313|EMBL:BAK67072.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_27
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28790..30757)
|
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IWQ4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16270.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30863..31546
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIE7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67070.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31626..32108
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIE6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67069.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_411_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(32490..33851)
|
trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO; K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source=
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIE5_9SPHN
|