name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_547_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1030..5286)
|
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
rpoC; DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS71_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5377..9558)
|
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS72_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9900..10454)
|
sodC; superoxide dismutase; K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase [Cu-Zn] {ECO:0000313|EMBL:BAK66233.1}; EC=1.15.1.1 {ECO:0000313|EMBL:BAK66233.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Superoxide dismutase [Cu-Zn] n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS73_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10539..11201)
|
putative nucleosidase; K01243 S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]
Putative nucleosidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS74_9SPHN
Putative nucleosidase {ECO:0000313|EMBL:BAK66234.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11208..11777)
|
apt; adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Adenine phosphoribosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITS7_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_6
unknown
|
Not on your lists |
11926..12732
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_547_curated_7
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13018..13398)
|
50S ribosomal protein L7/L12 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ET56_SPHCR
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13474..13989)
|
50S ribosomal protein L10 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITS4_9SPHN
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14694..15392)
|
50S ribosomal protein L1 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITS2_9SPHN
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15397..15828)
|
50S ribosomal protein L11 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITS1_9SPHN
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16346..16678)
|
UPF0060 membrane protein L485_23790 n=1 Tax=Sphingobium baderi LL03 RepID=T0G0B2_9SPHN
UPF0060 membrane protein NMD1_01450 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein; K09771 hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16850..18220)
|
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK77_9SPHN
putative aromatic acid transporter; K08195 MFS transporter, AAHS family, 4-hydroxybenzoate transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK67435.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18790..19326)
|
Transcription termination/antitermination protein NusG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II11_9SPHN
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19368..19574)
|
Protein translocase subunit SecE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II10_9SPHN
secE; putative preprotein translocase SecE subunit; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_15
unknown
|
Not on your lists |
20052..21287
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_547_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21270..21950)
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II09_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66932.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22072..22812
|
aat; leucyl/phenylalanyl-tRNA--protein transferase; K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II08_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22623..23267)
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II07_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66930.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23264..23725)
|
Putative NADH--ubiquinone oxidoreductase subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II06_9SPHN
putative NADH--ubiquinone oxidoreductase subunit
Putative NADH--ubiquinone oxidoreductase subunit {ECO:0000313|EMBL:BAK66929.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23722..24264)
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II05_9SPHN
hypothetical protein; K09005 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66928.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24264..24827)
|
Regulatory protein RecX n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II04_9SPHN
regulatory protein RecX; K03565 regulatory protein
Regulatory protein RecX {ECO:0000313|EMBL:BAK66927.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24980..26698
|
Acyl-CoA synthase {ECO:0000313|EMBL:BAK66926.1}; EC=2.3.1.86 {ECO:0000313|EMBL:BAK66926.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Acyl-CoA synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II03_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26779..29142
|
Putative signaling protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II02_9SPHN
Putative signaling protein {ECO:0000313|EMBL:BAK66925.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
putative signaling protein
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29150..29905)
|
ParA-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2II01_9SPHN
ParA-like protein
ParA-like protein {ECO:0000313|EMBL:BAK66924.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30040..30624
|
hypothetical protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHZ9_9SPHN
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30621..31718
|
Putative DNA processing protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHZ8_9SPHN
putative DNA processing protein; K04096 DNA processing protein
Putative DNA processing protein {ECO:0000313|EMBL:BAK66921.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
32051..34624
|
topA; DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
DNA topoisomerase 1 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHZ7_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
34820..35725
|
cysD; sulfate adenylyltransferase subunit 2; K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
Sulfate adenylyltransferase {ECO:0000256|SAAS:SAAS00055732}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055732};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Sulfate adenylyltransferase subunit 2 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHZ6_9SPHN
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
35781..37709
|
Sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHZ5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53002.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
|
|
SCNpilot_expt_1000_bf_scaffold_547_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
37706..38440
|
putative phosphatase; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
Putative phosphatase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHZ4_9SPHN
Putative phosphatase {ECO:0000313|EMBL:BAK66917.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|