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SCNpilot_expt_1000_bf_scaffold_130_curated

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Displaying items 1-30 of 335 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_130_curated_1
unknown

Not on your lists

1..75
DNA (75bp) protein (25aa)
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CABEF
SCNpilot_expt_1000_bf_scaffold_130_curated_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

200..1177
DNA (978bp) protein (326aa)
Putative carbohydrate/purine kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JV26_9PROT
Putative carbohydrate/purine kinase {ECO:0000313|EMBL:EKE78407.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
putative carbohydrate/purine kinase
SCNpilot_expt_1000_bf_scaffold_130_curated_3
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1387..2769)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07IV4_RHOP5
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
SCNpilot_expt_1000_bf_scaffold_130_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2898..3692)
DNA (795bp) protein (265aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP32_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65671.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3794..5095
DNA (1302bp) protein (434aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP31_9SPHN
putative aromatic acid transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK65670.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5304..6509
DNA (1206bp) protein (402aa)
putative M20A family peptidase; K01295 glutamate carboxypeptidase [EC:3.4.17.11]
Putative M20A family peptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP30_9SPHN
Putative M20A family peptidase {ECO:0000313|EMBL:BAK65669.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6502..7545
DNA (1044bp) protein (348aa)
astA; arginine N-succinyltransferase; K00673 arginine N-succinyltransferase [EC:2.3.1.109]
Arginine N-succinyltransferase {ECO:0000313|EMBL:BAK65668.1}; EC=2.3.1.109 {ECO:0000313|EMBL:BAK65668.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Arginine N-succinyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP29_9SPHN
SCNpilot_expt_1000_bf_scaffold_130_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7557..8978
DNA (1422bp) protein (474aa)
astD; N-succinylglutamate 5-semialdehyde dehydrogenase; K06447 succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
Succinylglutamate-semialdehyde dehydrogenase {ECO:0000256|SAAS:SAAS00007761}; EC=1.2.1.71 {ECO:0000256|SAAS:SAAS00007761};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
N-succinylglutamate 5-semialdehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP28_9SPHN
SCNpilot_expt_1000_bf_scaffold_130_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9148..10446
DNA (1299bp) protein (433aa)
astB; succinylarginine dihydrolase; K01484 succinylarginine dihydrolase [EC:3.5.3.23]
N-succinylarginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_01172, ECO:0000256|SAAS:SAAS00074425}; EC=3.5.3.23 {ECO:0000256|HAMAP-Rule:MF_01172, ECO:0000256|SAAS:SAAS00074418};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
N-succinylarginine dihydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP27_9SPHN
SCNpilot_expt_1000_bf_scaffold_130_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10443..11798
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP26_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65665.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_11
unknown

Not on your lists

comp(11895..12272)
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_130_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12287..12976)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRB5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68481.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12973..13800)
DNA (828bp) protein (276aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRB6_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK68482.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_14
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13955..15196
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Pseudomonas psychrophila RepID=UPI0002FA943D
major facilitator superfamily protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCNpilot_expt_1000_bf_scaffold_130_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16081..16473)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP25_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65664.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16494..17243)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP24_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65663.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17519..17944
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP23_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65662.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18517..19527)
DNA (1011bp) protein (337aa)
Putative MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP22_9SPHN
putative MarR family transcriptional regulator
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:BAK65661.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19558..20055)
DNA (498bp) protein (166aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP21_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65660.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20097..20582)
DNA (486bp) protein (162aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP20_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65659.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21261..21566
DNA (306bp) protein (102aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP19_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65658.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_22
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21651..22145)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SEW5_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM94104.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_1000_bf_scaffold_130_curated_23
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22365..22640
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3Q4_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_130_curated_24
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22650..23561
DNA (912bp) protein (304aa)
Cation diffusion facilitator family transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XET6_NOVAD
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:KGB54356.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
cation diffusion facilitator family transporter
SCNpilot_expt_1000_bf_scaffold_130_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23630..24472)
DNA (843bp) protein (281aa)
putative esterase; K01070 S-formylglutathione hydrolase [EC:3.1.2.12]
Putative esterase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP18_9SPHN
Putative esterase {ECO:0000313|EMBL:BAK65657.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24476..24862)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP17_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65656.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_130_curated_27
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24914..25315)
DNA (402bp) protein (134aa)
Glyoxalase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HEG5_9SPHN
Glyoxalase {ECO:0000313|EMBL:EQB11392.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
glyoxalase-family protein
SCNpilot_expt_1000_bf_scaffold_130_curated_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25353..26465)
DNA (1113bp) protein (371aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
alcohol dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
Putative alcohol dehydrogenase class III n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y660_9SPHN
SCNpilot_expt_1000_bf_scaffold_130_curated_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26837..27535)
DNA (699bp) protein (233aa)
Putative Crp/Fnr family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL57_9SPHN
Nitrogen fixation regulation protein FixK {ECO:0000313|EMBL:AKH42088.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Crp/FNR family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
SCNpilot_expt_1000_bf_scaffold_130_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27773..28381)
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP13_9SPHN
hypothetical protein; K07118
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65652.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying items 1-30 of 335 in total

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