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SCNpilot_expt_1000_bf_scaffold_728_curated

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_728_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164..1693)
DNA (1530bp) protein (510aa)
Putative signaling protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPP2_9SPHN
putative signaling protein
Putative signaling protein {ECO:0000313|EMBL:BAK65720.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_728_curated_2
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1805..2074)
DNA (270bp) protein (90aa)
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase-like protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V5V7_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:KGB53802.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
diadenosine tetraphosphate (Ap4A) hydrolase-like protein
SCNpilot_expt_1000_bf_scaffold_728_curated_3
unknown

Not on your lists

comp(2238..2438)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_728_curated_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2813..3475
DNA (663bp) protein (221aa)
Crp/Fnr family transcription regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62CAB
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EZP53524.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
Crp/FNR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_728_curated_5
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3468..4193
DNA (726bp) protein (242aa)
Putative histidine kinase with PAS/PAC motif n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z9T9_9BRAD
putative histidine kinase with PAS/PAC motif
Putative histidine kinase with PAS/PAC motif {ECO:0000313|EMBL:BAM90051.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_728_curated_6
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4132..4542)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YS20_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM26762.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_728_curated_7
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4658..5092)
DNA (435bp) protein (145aa)
UPI0003CFE1C0 related cluster n=1 Tax=unknown RepID=UPI0003CFE1C0
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:ESZ19132.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
CBS domain-containing protein
SCNpilot_expt_1000_bf_scaffold_728_curated_8
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5276..5683
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1Y8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48938.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_728_curated_9
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6118..6687
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I952_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB06149.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_728_curated_10
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6710..7006
DNA (297bp) protein (99aa)
Plasmid stabilization protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G853_9SPHN
Plasmid stabilization protein {ECO:0000313|EMBL:EQA96801.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_728_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7498..8556)
DNA (1059bp) protein (353aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS77_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66237.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_728_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8719..10092
DNA (1374bp) protein (458aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS75_9SPHN
putative aromatic acid transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK66235.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_728_curated_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10369..12039)
DNA (1671bp) protein (557aa)
Recombinase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QH23_METSZ
recombinase
Recombinase {ECO:0000313|EMBL:CCJ07336.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_728_curated_14
unknown

Not on your lists

comp(12039..12188)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_728_curated_15
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12291..12566
DNA (276bp) protein (92aa)
Arc domain-containing protein n=1 Tax=Oceanicola sp. S124 RepID=UPI000255A956
DNA-binding protein {ECO:0000313|EMBL:ESX80233.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
Arc domain-containing protein
SCNpilot_expt_1000_bf_scaffold_728_curated_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12938..15418)
DNA (2481bp) protein (827aa)
Putative cation transport ATPase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6P1_9SPHN
Putative cation transport ATPase {ECO:0000313|EMBL:GAD48826.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
heavy metal translocating P-type ATPase
SCNpilot_expt_1000_bf_scaffold_728_curated_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15474..18716)
DNA (3243bp) protein (1081aa)
cation transporter n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000364BF1B
Cation transporter {ECO:0000313|EMBL:KFD26961.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
CzcA family heavy metal efflux protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_expt_1000_bf_scaffold_728_curated_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18720..19880)
DNA (1161bp) protein (387aa)
Secretion protein HlyD n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQB7_SPHAL
Hemolysin D {ECO:0000313|EMBL:KHA65689.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_expt_1000_bf_scaffold_728_curated_19
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(19884..21155)
DNA (1272bp) protein (424aa)
transporter n=1 Tax=Sphingomonas melonis RepID=UPI00038211DB
Transporter {ECO:0000313|EMBL:KIJ72436.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
SCNpilot_expt_1000_bf_scaffold_728_curated_20
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21587..22237)
DNA (651bp) protein (217aa)
cation transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489424
Cation transporter {ECO:0000313|EMBL:EXS70609.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
cation efflux protein
SCNpilot_expt_1000_bf_scaffold_728_curated_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22306..22695
DNA (390bp) protein (130aa)
Putative MerR family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK09_9SPHN
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:GAD48815.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
MerR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_728_curated_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22798..23790)
DNA (993bp) protein (331aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489FC4
Integrase {ECO:0000313|EMBL:EZP66169.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_728_curated_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24063..24608)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489FC3
Uncharacterized protein {ECO:0000313|EMBL:EZP66170.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_728_curated_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24996..25505
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Corynebacterium nuruki RepID=UPI0002485E8A
Uncharacterized protein {ECO:0000313|EMBL:EZP66171.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_728_curated_25
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25541..26092)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0I4T7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP66173.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_728_curated_26
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26298..27323)
DNA (1026bp) protein (342aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I124_RHOVT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP72347.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_728_curated_27
Marinobacter lipolyticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27760..28395)
DNA (636bp) protein (212aa)
PEP-CTERM putative exosortase interaction domain-containing protein n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8L885_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:EON91918.1}; TaxID=1318628 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter lipolyticus SM19.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_728_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28661..29893
DNA (1233bp) protein (411aa)
FAD-dependent oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITT5_9SPHN
FAD-dependent oxidoreductase
FAD-dependent oxidoreductase {ECO:0000313|EMBL:BAK66795.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_728_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30029..30460
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITT7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66797.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_728_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30861..31745)
DNA (885bp) protein (295aa)
nadC; nicotinate-nucleotide pyrophosphorylase; K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) {ECO:0000313|EMBL:BAK66326.1}; EC=2.4.2.19 {ECO:0000313|EMBL:BAK66326.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG6_9SPHN
Displaying items 1-30 of 57 in total

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