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SCNpilot_expt_1000_bf_scaffold_626_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_626_curated_1
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38..931)
DNA (894bp) protein (298aa)
Antirestriction protein ArdC n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH81_9SPHN
Antirepressor {ECO:0000313|EMBL:KKC27187.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
antirestriction protein ArdC
SCNpilot_expt_1000_bf_scaffold_626_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1309..1590)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7C1
Uncharacterized protein {ECO:0000313|EMBL:ENY82822.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_626_curated_3
unknown

Not on your lists

comp(1722..1850)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_626_curated_4
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1893..2492)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7C3
Uncharacterized protein {ECO:0000313|EMBL:AGF25455.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
SCNpilot_expt_1000_bf_scaffold_626_curated_5
unknown

Not on your lists

comp(2452..2646)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7C4
SCNpilot_expt_1000_bf_scaffold_626_curated_6
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2648..3514)
DNA (867bp) protein (289aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Variovorax sp. WDL1 RepID=M1KJZ7_9BURK
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AGF25453.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
Phytanoyl-CoA dioxygenase
SCNpilot_expt_1000_bf_scaffold_626_curated_7
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3511..4116)
DNA (606bp) protein (202aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
autoinducer synthase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7C6
putative autoinducer synthesis protein
SCNpilot_expt_1000_bf_scaffold_626_curated_8
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4187..4975)
DNA (789bp) protein (263aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax sp. WDL1 RepID=M1JUZ3_9BURK
LuxR family transcriptional regulator {ECO:0000313|EMBL:AGF25450.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
LuxR-family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_626_curated_9
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5140..8250)
DNA (3111bp) protein (1037aa)
TonB-denpendent receptor n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003605BC8
Uncharacterized protein {ECO:0000313|EMBL:KHL25478.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_626_curated_10
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8684..9229)
DNA (546bp) protein (182aa)
Putative Hydroxylacyl-CoA dehydrogenase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L310_9SPHN
Putative Hydroxylacyl-CoA dehydrogenase {ECO:0000313|EMBL:EIZ78684.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_626_curated_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9289..10464)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G823_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96776.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_626_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10592..11080)
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIC5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67048.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_626_curated_13
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11122..11622)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11E91_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG64284.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_626_curated_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11635..12123)
DNA (489bp) protein (163aa)
Putative membrane protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ21_9SPHN
DNA, contig: SP661 {ECO:0000313|EMBL:GAN15578.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_626_curated_15
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12194..12685)
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WN00_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70770.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_626_curated_16
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12705..13118)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WD48_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ78111.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_626_curated_17
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13149..13886)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C3R4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ78110.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_626_curated_18
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13883..14911)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1Q9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77385.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_626_curated_19
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15182..15880
DNA (699bp) protein (233aa)
Putative transcriptional regulator n=1 Tax=Rhodovulum sp. PH10 RepID=J6UFQ9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJC56639.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_626_curated_20
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15947..16876)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0FZH3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96775.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_626_curated_21
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16980..17645
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HBN8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96774.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_626_curated_22
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17642..18580
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HGV9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96773.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_626_curated_23
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18583..20055
DNA (1473bp) protein (491aa)
FAD-binding monooxygenase; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
monooxygenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6C3BD
Uncharacterized protein {ECO:0000313|EMBL:EQA96772.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_1000_bf_scaffold_626_curated_24
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20096..22402
DNA (2307bp) protein (769aa)
TonB-dependent receptor plug n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBS7_9SPHN
TonB-dependent receptor plug {ECO:0000313|EMBL:EIZ77616.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
TonB-dependent receptor plug
SCNpilot_expt_1000_bf_scaffold_626_curated_25
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22402..23397
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HGV5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96768.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
oxidoreductase zinc-binding protein; K07119
SCNpilot_expt_1000_bf_scaffold_626_curated_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23409..24473
DNA (1065bp) protein (355aa)
Vanillate monooxygenase (EC:1.14.13.82); K03862 vanillate monooxygenase [EC:1.14.13.82]
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HBN1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96769.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_1000_bf_scaffold_626_curated_27
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24522..25370
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G9S9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA96777.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
2-hydroxyhepta-24-diene-1
SCNpilot_expt_1000_bf_scaffold_626_curated_28
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25367..26320
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HBP5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGP01903.1}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
alpha/beta fold family hydrolase
SCNpilot_expt_1000_bf_scaffold_626_curated_29
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26507..27436)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H4Z6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB11391.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
NmrA-like protein
SCNpilot_expt_1000_bf_scaffold_626_curated_30
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27587..28198)
DNA (612bp) protein (204aa)
gst; glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Cronobacter muytjensii 530 RepID=K8A4J5_9ENTR
Glutathione S-transferase {ECO:0000313|EMBL:AIB12811.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Displaying items 1-30 of 42 in total

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