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SCNpilot_expt_1000_bf_scaffold_2732_curated

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2732_curated_1
bacterium YEK0313, Bacteria

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203..1132
DNA (930bp) protein (310aa)
conjugal transfer protein TraI n=1 Tax=Hoeflea sp. 108 RepID=UPI0003808EC7
Type IV secretion system protein virB10 {ECO:0000313|EMBL:CEJ11233.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
trbI; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_2732_curated_2
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1132..1389
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SJS9_RHOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG08244.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
SCNpilot_expt_1000_bf_scaffold_2732_curated_3
unknown

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2050..2643
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2732_curated_4
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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2652..3113
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0003039C88
HxlR family transcriptional regulator {ECO:0000313|EMBL:KJH70645.1}; TaxID=1618023 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2732_curated_5
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3283..3864
DNA (582bp) protein (194aa)
TetR family transcriptional regulator n=1 Tax=Burkholderia terrae BS001 RepID=I5CP97_9BURK
TetR family transcriptional regulator
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_2732_curated_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3919..4914
DNA (996bp) protein (332aa)
alcohol dehydrogenase n=2 Tax=Acetobacteraceae RepID=UPI000237EA09
Quinone oxidoreductase, YhdH/YhfP family {ECO:0000313|EMBL:EHP77616.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
quinone oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2732_curated_7
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5115..6611
DNA (1497bp) protein (499aa)
Aldehyde Dehydrogenase n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KTU0_METEX
Aldehyde Dehydrogenase {ECO:0000313|EMBL:EHP83777.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
aldehyde dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_2732_curated_8
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6680..7804
DNA (1125bp) protein (375aa)
12-oxophytodienoate reductase {ECO:0000313|EMBL:EHP83776.1}; EC=1.3.1.42 {ECO:0000313|EMBL:EHP83776.1};; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
12-oxophytodienoate reductase n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KTT9_METEX
NADH:flavin oxidoreductase/NADH oxidase family
SCNpilot_expt_1000_bf_scaffold_2732_curated_9
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7884..8189
DNA (306bp) protein (102aa)
Regulatory protein ArsR n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KTT8_METEX
ArsR family transcriptional regulator
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_2732_curated_10
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8230..9201
DNA (972bp) protein (324aa)
Luciferase-type oxidoreductase n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KTT7_METEX
Uncharacterized protein {ECO:0000313|EMBL:KFL44756.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
luciferase-type oxidoreductase, BA3436 family
SCNpilot_expt_1000_bf_scaffold_2732_curated_11
unknown

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9314..9382
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 11 items

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