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scnpilot_p_inoc_scaffold_844_curated

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Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_844_curated_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..295)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002FF2064
Transcriptional regulator {ECO:0000313|EMBL:EJL23203.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_844_curated_2
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

332..1501
DNA (1170bp) protein (390aa)
Ring-hydroxylating dioxygenase, large terminal subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2P7X4_9SPHN
Ring-hydroxylating dioxygenase, large terminal subunit {ECO:0000313|EMBL:EJL23202.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Rieske (2Fe-2S) protein
scnpilot_p_inoc_scaffold_844_curated_3
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1526..3127
DNA (1602bp) protein (534aa)
FAD dependent oxidoreductase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VY57_9SPHN
FAD dependent oxidoreductase
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_p_inoc_scaffold_844_curated_4
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3082..3648)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VET4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP83442.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_844_curated_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3842..5194)
DNA (1353bp) protein (451aa)
Amidohydrolase, imidazolonepropionase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZWZ9_9SPHN
Amidohydrolase, imidazolonepropionase {ECO:0000313|EMBL:EJL23199.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
amidohydrolase
scnpilot_p_inoc_scaffold_844_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5278..6300
DNA (1023bp) protein (341aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A3 RepID=F8TTI9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AKH43902.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_844_curated_7
unknown

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comp(7491..7619)
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_844_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7742..8737)
DNA (996bp) protein (332aa)
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK {ECO:0000313|EMBL:AKH44015.1}; EC=2.7.-.- {ECO:0000313|EMBL:AKH44015.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydroxyacetone kinase n=1 Tax=Glaciibacter superstes RepID=UPI0003B4B9F6
dihydroxyacetone kinase subunit DhaK
scnpilot_p_inoc_scaffold_844_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8772..9437)
DNA (666bp) protein (222aa)
PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL {ECO:0000313|EMBL:AKH44016.1}; EC=2.7.-.- {ECO:0000313|EMBL:AKH44016.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydroxyacetone kinase subunit L; K05879 dihydroxyacetone kinase, C-terminal domain [EC:2.7.1.-]
dihydroxyacetone kinase n=1 Tax=Glaciibacter superstes RepID=UPI0003B64C56
scnpilot_p_inoc_scaffold_844_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9450..10175)
DNA (726bp) protein (242aa)
Phosphorylated carbohydrates phosphatase {ECO:0000313|EMBL:AKH44017.1}; EC=3.1.3.- {ECO:0000313|EMBL:AKH44017.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Uncharacterized protein id=3667437 bin=GWC2_Bacteroidetes_40_22 species=unknown genus=unknown taxon_order=Brassicales taxon_class=unknown phylum=Streptophyta tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
possibly a phosphatase from the CbbY protein family
scnpilot_p_inoc_scaffold_844_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10187..11065)
DNA (879bp) protein (293aa)
D-tagatose-1,6-bisphosphate aldolase subunit GatY {ECO:0000313|EMBL:AKH44018.1}; EC=4.1.2.40 {ECO:0000313|EMBL:AKH44018.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative Fructose-bisphosphate aldolase class 2 (EC:4.1.2.13)
Putative Fructose-bisphosphate aldolase class 2 n=6 Tax=Vibrio nigripulchritudo RepID=U4K289_9VIBR
scnpilot_p_inoc_scaffold_844_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11369..11854
DNA (486bp) protein (162aa)
Isoquinoline 1-oxidoreductase subunit alpha {ECO:0000313|EMBL:AKH44208.1}; EC=1.3.99.16 {ECO:0000313|EMBL:AKH44208.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Probable oxidoreductase n=7 Tax=Bordetella RepID=K0MME1_BORBM
oxidoreductase
scnpilot_p_inoc_scaffold_844_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11847..14057
DNA (2211bp) protein (737aa)
Isoquinoline 1-oxidoreductase subunit beta {ECO:0000313|EMBL:AKH44209.1}; EC=1.3.99.16 {ECO:0000313|EMBL:AKH44209.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Twin-arginine translocation pathway signal protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2N4_9SPHN
twin-arginine translocation pathway signal protein
scnpilot_p_inoc_scaffold_844_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14414..15010)
DNA (597bp) protein (199aa)
hypothetical protein; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7D4_9SPHN
Molybdopterin-guanine dinucleotide biosynthesis protein MobA {ECO:0000313|EMBL:AKH44212.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_844_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15007..15933)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B53795
XdhC and CoxI family protein {ECO:0000313|EMBL:AKH44211.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K07402 xanthine dehydrogenase accessory factor
scnpilot_p_inoc_scaffold_844_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15965..16960
DNA (996bp) protein (332aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL71_9SPHN
Putative aliphatic sulfonates-binding protein {ECO:0000313|EMBL:AKH42142.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_844_curated_17
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17029..18486)
DNA (1458bp) protein (486aa)
Glutarate-semialdehyde dehydrogenase DavD {ECO:0000313|EMBL:AKH42136.1}; EC=1.2.1.20 {ECO:0000313|EMBL:AKH42136.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
gabD; succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003699A46
scnpilot_p_inoc_scaffold_844_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18610..19647
DNA (1038bp) protein (346aa)
putative hydrolase; K14333 2,3-dihydroxybenzoate decarboxylase [EC:4.1.1.46]
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM83_9SPHN
Amidohydrolase {ECO:0000313|EMBL:AKH44230.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_844_curated_19
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19762..20886
DNA (1125bp) protein (375aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAW9_9SPHN
Putative CoA-transferase {ECO:0000313|EMBL:GAM02652.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
L-carnitine dehydratase/bile acid-inducible protein F
scnpilot_p_inoc_scaffold_844_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21032..21928)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Eutypa lata (strain UCR-EL1) RepID=M7SJI7_EUTLA
Uncharacterized protein {ECO:0000313|EMBL:AKH44235.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_844_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22067..23095)
DNA (1029bp) protein (343aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJW0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44236.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_844_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23165..24007)
DNA (843bp) protein (281aa)
Protocatechuate 4,5-dioxygenase beta chain {ECO:0000313|EMBL:AKH44233.1}; EC=1.13.11.8 {ECO:0000313|EMBL:AKH44233.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
protocatechuate 4,5-dioxygenase subunit beta; K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase beta chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJI5_9SPHN
scnpilot_p_inoc_scaffold_844_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24010..24411)
DNA (402bp) protein (134aa)
Protocatechuate 4,5-dioxygenase alpha chain {ECO:0000313|EMBL:AKH44234.1}; EC=1.13.11.8 {ECO:0000313|EMBL:AKH44234.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
protocatechuate 4,5-dioxygenase subunit alpha; K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase alpha chain n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJI4_9SPHN
scnpilot_p_inoc_scaffold_844_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24484..25137)
DNA (654bp) protein (218aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRG0_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK68526.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_844_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25159..27120)
DNA (1962bp) protein (654aa)
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:AKH44238.1}; EC=6.2.1.1 {ECO:0000313|EMBL:AKH44238.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
acetyl-CoA synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJ13_9SPHN
scnpilot_p_inoc_scaffold_844_curated_26
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27172..27582)
DNA (411bp) protein (137aa)
MarR family transcriptional regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ILB5_9SPHN
MarR family transcriptional regulator {ECO:0000313|EMBL:KHL25312.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
MarR family transcriptional regulator
scnpilot_p_inoc_scaffold_844_curated_27
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27687..28547
DNA (861bp) protein (287aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CCA92215.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CCA92215.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Enoyl-CoA hydratase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ILB3_9SPHN
scnpilot_p_inoc_scaffold_844_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28773..30896
DNA (2124bp) protein (708aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000313|EMBL:AKH44241.1}; EC=6.2.1.5 {ECO:0000313|EMBL:AKH44241.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
CoA-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAK2_NOVAD
CoA-binding protein
scnpilot_p_inoc_scaffold_844_curated_29
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31082..32284
DNA (1203bp) protein (401aa)
transaldolase; K00616 transaldolase [EC:2.2.1.2]
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000368A2A7
Tax=RBG_16_Deltaproteobacteria_49_23_curated
scnpilot_p_inoc_scaffold_844_curated_30

Not on your lists

32391..33326
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI000318601C
Putative esterase/lipase {ECO:0000313|EMBL:ACF98223.1}; TaxID=548902 species="Bacteria; environmental samples.;" source="uncultured bacterium 2304.;"
putative esterase/lipase
Displaying items 1-30 of 100 in total

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