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scnpilot_p_inoc_scaffold_2028_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2028_curated_1
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..165
DNA (165bp) protein (55aa)
peptidase M20 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6217B
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
scnpilot_p_inoc_scaffold_2028_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162..584
DNA (423bp) protein (141aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMF4_9SPHN
Glyoxalase-like domain protein {ECO:0000313|EMBL:AKH41177.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
bleomycin resistance protein; K06991
scnpilot_p_inoc_scaffold_2028_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

633..1319
DNA (687bp) protein (229aa)
Uncharacterized conserved secreted or membrane protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9E4_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH41176.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2028_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1962..2633)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIN4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41174.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2028_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2747..3322)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y508_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41173.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2028_curated_6
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3542..3964)
DNA (423bp) protein (141aa)
50S ribosomal protein L17 n=1 Tax=Novosphingobium sp. AP12 RepID=J2H466_9SPHN
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
scnpilot_p_inoc_scaffold_2028_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4051..5106)
DNA (1056bp) protein (352aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:AKH41170.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AKH41170.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS67_9SPHN
scnpilot_p_inoc_scaffold_2028_curated_8
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5213..5602)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=4 Tax=Novosphingobium RepID=F6IME5_9SPHN
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
scnpilot_p_inoc_scaffold_2028_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5657..6025)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPN4_9SPHN
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_2028_curated_10
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6450..7097)
DNA (648bp) protein (216aa)
adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphing
Adenylate kinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IME2_9SPHN
scnpilot_p_inoc_scaffold_2028_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7161..8525)
DNA (1365bp) protein (455aa)
Protein translocase subunit SecY n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0C2_9SPHN
Preprotein translocase subunit SecY {ECO:0000313|EMBL:AKH41165.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
scnpilot_p_inoc_scaffold_2028_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8650..9138)
DNA (489bp) protein (163aa)
50S ribosomal protein L15 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS72_9SPHN
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
scnpilot_p_inoc_scaffold_2028_curated_13
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9210..10361)
DNA (1152bp) protein (384aa)
acyltransferase 3 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289F1A0
acyltransferase 3
Acyltransferase 3 {ECO:0000313|EMBL:ADP70094.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
scnpilot_p_inoc_scaffold_2028_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10453..10629)
DNA (177bp) protein (59aa)
50S ribosomal protein L30 n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD093A
50S ribosomal protein L30 {ECO:0000313|EMBL:AKH41163.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
scnpilot_p_inoc_scaffold_2028_curated_15
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10636..11376)
DNA (741bp) protein (247aa)
30S ribosomal protein S5 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CBR1_9SPHN
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
scnpilot_p_inoc_scaffold_2028_curated_16
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11376..11720)
DNA (345bp) protein (115aa)
50S ribosomal protein L18 n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WB45_9SPHN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
scnpilot_p_inoc_scaffold_2028_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11722..12255)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0C7_9SPHN
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
scnpilot_p_inoc_scaffold_2028_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12255..12650)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6X7_9SPHN
30S ribosomal protein S8 {ECO:0000313|EMBL:AKH41159.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
scnpilot_p_inoc_scaffold_2028_curated_19
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12661..12966)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=2 Tax=Novosphingobium RepID=F6IMD2_9SPHN
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_2028_curated_20
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12993..13574)
DNA (582bp) protein (194aa)
50S ribosomal protein L5 n=2 Tax=Novosphingobium RepID=F6IMD1_9SPHN
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_2028_curated_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13567..13887)
DNA (321bp) protein (107aa)
50S ribosomal protein L24 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ72_9SPHN
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
scnpilot_p_inoc_scaffold_2028_curated_22
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13887..14255)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0D4_9SPHN
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
scnpilot_p_inoc_scaffold_2028_curated_23
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14317..14598)
DNA (282bp) protein (94aa)
30S ribosomal protein S17 n=2 Tax=Novosphingobium RepID=F6IMC8_9SPHN
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
scnpilot_p_inoc_scaffold_2028_curated_24
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14610..14813)
DNA (204bp) protein (68aa)
50S ribosomal protein L29 n=1 Tax=Sphingomonas sp. LH128 RepID=J8W441_9SPHN
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
scnpilot_p_inoc_scaffold_2028_curated_25
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14817..15248)
DNA (432bp) protein (144aa)
50S ribosomal protein L16 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J0D3_9SPHN
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
scnpilot_p_inoc_scaffold_2028_curated_26
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15269..15964)
DNA (696bp) protein (232aa)
30S ribosomal protein S3 n=2 Tax=Novosphingobium RepID=F6IMC5_9SPHN
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
scnpilot_p_inoc_scaffold_2028_curated_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15967..16344)
DNA (378bp) protein (126aa)
50S ribosomal protein L22 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0D9_9SPHN
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
scnpilot_p_inoc_scaffold_2028_curated_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16344..16622)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS19_NOVAD
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
Displaying 28 items

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