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SCNpilot_cont_300_bf_scaffold_900_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_900_curated_1
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..217)
DNA (216bp) protein (72aa)
putative oxidoreductase; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Dihydropyrimidine dehydrogenase subunit A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX68_9SPHN
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_900_curated_2
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(351..1160)
DNA (810bp) protein (270aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
UDP pyrophosphate phosphatase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B48D55
SCNpilot_cont_300_bf_scaffold_900_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1215..2150)
DNA (936bp) protein (312aa)
NADH dehydrogenase (EC:1.6.99.3); K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3]
3-beta-hydroxy-delta(5)-steroid dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B785C2
3-beta hydroxysteroid dehydrogenase {ECO:0000313|EMBL:AJP73747.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_900_curated_4
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2577..3329)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C653
Uncharacterized protein {ECO:0000313|EMBL:EXS68716.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_900_curated_5
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3348..5036)
DNA (1689bp) protein (563aa)
Conjugal transfer protein TraA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM09_9SPHN
Conjugal transfer protein TraA {ECO:0000313|EMBL:EXS69652.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
conjugal transfer protein TraA
SCNpilot_cont_300_bf_scaffold_900_curated_6
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5477..6292)
DNA (816bp) protein (272aa)
Conjugal transfer protein TraA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MND5_9SPHN
Conjugal transfer protein TraA {ECO:0000313|EMBL:CCW18214.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
conjugal transfer relaxase TraA
SCNpilot_cont_300_bf_scaffold_900_curated_7
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6451..6771
DNA (321bp) protein (107aa)
UPI0003D5AEA8 related cluster n=1 Tax=unknown RepID=UPI0003D5AEA8
Conjugal transfer protein TraD {ECO:0000313|EMBL:ETI63972.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_900_curated_8
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6719..7039
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0G1I4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR18033.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
conjugal transfer TraD family protein
SCNpilot_cont_300_bf_scaffold_900_curated_9
unknown

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comp(7607..8311)
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_900_curated_10
unknown

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8494..8877
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000347133A
SCNpilot_cont_300_bf_scaffold_900_curated_11
unknown

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comp(8781..9410)
DNA (630bp) protein (210aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_900_curated_12
unknown

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9613..10164
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003473354
SCNpilot_cont_300_bf_scaffold_900_curated_13
unknown

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10161..10751
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_900_curated_14
unknown

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comp(10681..11241)
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_900_curated_15
unknown

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comp(11281..12549)
DNA (1269bp) protein (423aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_900_curated_16
unknown

Not on your lists

12656..13036
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_900_curated_17
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13131..13463)
DNA (333bp) protein (111aa)
DNA-binding protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HIZ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11166.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
XRE family transcriptional regulator; K07726 putative transcriptional regulator
SCNpilot_cont_300_bf_scaffold_900_curated_18
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13441..13863)
DNA (423bp) protein (141aa)
Toxin RelE n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HDT4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11167.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_900_curated_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14348..14563
DNA (216bp) protein (72aa)
DNA-binding protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0JA67_9SPHN
DNA-binding protein {ECO:0000313|EMBL:KEZ21164.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
phage transcriptional regulator, AlpA; K07733 prophage regulatory protein
SCNpilot_cont_300_bf_scaffold_900_curated_20
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14560..14748
DNA (189bp) protein (63aa)
UPI0003D5E888 related cluster n=1 Tax=unknown RepID=UPI0003D5E888
Excisionase {ECO:0000313|EMBL:ETI64177.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_900_curated_21
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14723..15931)
DNA (1209bp) protein (403aa)
recombinase n=1 Tax=Sphingobium chinhatense RepID=UPI00037220DE
Recombinase {ECO:0000313|EMBL:KER36603.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
putative phage integrase
SCNpilot_cont_300_bf_scaffold_900_curated_22
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16324..17556
DNA (1233bp) protein (411aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEB9
Integrase {ECO:0000313|EMBL:ETI65309.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
putative integrase
SCNpilot_cont_300_bf_scaffold_900_curated_23
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17701..17991
DNA (291bp) protein (97aa)
Putative transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J3ABB4_9SPHN
Putative transcriptional regulator {ECO:0000313|EMBL:EJL28679.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_900_curated_24
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17988..19322
DNA (1335bp) protein (445aa)
serine kinase HipA; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
HipA N-terminal domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWP7_METTR
HipA protein {ECO:0000313|EMBL:EJW10829.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_300_bf_scaffold_900_curated_25
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19296..19496)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003748E71
Uncharacterized protein {ECO:0000313|EMBL:EQB33258.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_900_curated_26
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19493..19723)
DNA (231bp) protein (77aa)
UPI0003D5C9F6 related cluster n=1 Tax=unknown RepID=UPI0003D5C9F6
Uncharacterized protein {ECO:0000313|EMBL:ETI65307.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_900_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19725..20924)
DNA (1200bp) protein (400aa)
Conjugal transfer protein TrbI n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H2_9SPHN
Conjugal transfer protein TrbI {ECO:0000313|EMBL:ENY82792.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_cont_300_bf_scaffold_900_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20921..21865)
DNA (945bp) protein (315aa)
P-type conjugative transfer protein TrbG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGI4_9SPHN
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:ENY82793.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_300_bf_scaffold_900_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21862..22680)
DNA (819bp) protein (273aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX16_9SPHN
Conjugal transfer protein TrbF {ECO:0000313|EMBL:ENY82794.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_300_bf_scaffold_900_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22680..23984)
DNA (1305bp) protein (435aa)
conjugal transfer protein TrbL n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC1
Conjugal transfer protein TrbL {ECO:0000313|EMBL:ENY82795.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Displaying items 1-30 of 37 in total

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