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SCNpilot_cont_300_bf_scaffold_428_curated

Search features with annotation key words

Displaying items 1-30 of 134 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_428_curated_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..154
DNA (153bp) protein (51aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A3E7E
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26872.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_428_curated_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

227..673
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=K9CLA2_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72658.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_428_curated_3
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1000..1347
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB01
Uncharacterized protein {ECO:0000313|EMBL:AJR25301.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_428_curated_4
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1790..3019
DNA (1230bp) protein (410aa)
UPI0003D5C534 related cluster n=1 Tax=unknown RepID=UPI0003D5C534
Transporter {ECO:0000313|EMBL:EXS68324.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
outer membrane efflux protein
SCNpilot_cont_300_bf_scaffold_428_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3016..4230
DNA (1215bp) protein (405aa)
RND transporter n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289F5F5
Cation efflux system protein CusB {ECO:0000313|EMBL:GAD49699.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
cusB; copper efflux system membrane protein CusB; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
SCNpilot_cont_300_bf_scaffold_428_curated_6
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4158..5303)
DNA (1146bp) protein (382aa)
Putative uncharacterized protein id=4588905 bin=GWC2_Elusimicrobia_64_44 species=Brevundimonas diminuta genus=Brevundimonas taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_cont_300_bf_scaffold_428_curated_7
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6621..7343
DNA (723bp) protein (241aa)
cation transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD22A
heavy metal efflux pump CzcA; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_300_bf_scaffold_428_curated_8
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7661..10153
DNA (2493bp) protein (831aa)
Vitamin K epoxide reductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ11_SPHAL
vitamin K epoxide reductase
Vitamin K epoxide reductase {ECO:0000313|EMBL:ABF54261.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_cont_300_bf_scaffold_428_curated_9
unknown

Not on your lists

10208..10408
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_428_curated_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10456..10980)
DNA (525bp) protein (175aa)
Iron permease FTR1 family protein n=2 Tax=Sphingomonadaceae RepID=F3X356_9SPHN
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15829.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
high-affinity iron transporter; K07243 high-affinity iron transporter
SCNpilot_cont_300_bf_scaffold_428_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15018..16331
DNA (1314bp) protein (438aa)
type II restriction enzyme NmeDIP n=1 Tax=Sphingomonas melonis RepID=UPI000367A04F
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26885.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_428_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16396..17280
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035E1666
DNA, contig: SP670 {ECO:0000313|EMBL:GAN15869.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_428_curated_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17366..17698
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D506_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72665.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_428_curated_14
unknown

Not on your lists

18014..18244
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_428_curated_15
unknown

Not on your lists

18524..18697
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_428_curated_16
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18966..19211)
DNA (246bp) protein (82aa)
membrane protein n=1 Tax=Sphingomonas melonis RepID=UPI00036D1C93
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15831.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
glutaredoxin
SCNpilot_cont_300_bf_scaffold_428_curated_17
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19380..19625
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MK33_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW17099.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
transposase
SCNpilot_cont_300_bf_scaffold_428_curated_18
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19657..21078)
DNA (1422bp) protein (474aa)
transposase IS66 n=1 Tax=Sphingobium xenophagum RepID=UPI000363D7A4
Mobile element protein {ECO:0000313|EMBL:EZP79889.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
transposase IS66
SCNpilot_cont_300_bf_scaffold_428_curated_19
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21083..22282
DNA (1200bp) protein (400aa)
Mobile element protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJC8_9SPHN
Mobile element protein {ECO:0000313|EMBL:CCW17315.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
transposase for insertion sequence element ISRM3
SCNpilot_cont_300_bf_scaffold_428_curated_20
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22272..22628)
DNA (357bp) protein (119aa)
transposase IS66 n=1 Tax=Sphingobium xenophagum RepID=UPI00035FD2D9
Mobile element protein {ECO:0000313|EMBL:EZP79889.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
transposase IS66
SCNpilot_cont_300_bf_scaffold_428_curated_21
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22700..23041)
DNA (342bp) protein (114aa)
IS66 Orf2 family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VHC5_SPHWW
IS66 Orf2 family protein; K07484 transposase
IS66 Orf2 family protein {ECO:0000313|EMBL:ABQ71691.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_428_curated_22
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23038..23322)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036ED299
Transposase IS3/IS911 {ECO:0000313|EMBL:EMD81576.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
SCNpilot_cont_300_bf_scaffold_428_curated_23
unknown

Not on your lists

comp(23458..23712)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_428_curated_24
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23788..24102)
DNA (315bp) protein (105aa)
UPI0003D634E3 related cluster n=1 Tax=unknown RepID=UPI0003D634E3
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ETI62698.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
sodium/calcium exchanger type membrane protein; K07301 inner membrane protein
SCNpilot_cont_300_bf_scaffold_428_curated_25
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24971..25318)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BE8
Uncharacterized protein {ECO:0000313|EMBL:KDP94882.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
hypothetical protein; K09137 hypothetical protein
SCNpilot_cont_300_bf_scaffold_428_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25591..26649)
DNA (1059bp) protein (353aa)
Transposase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMR2_9RHIZ
Transposase {ECO:0000313|EMBL:EHK57981.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative transposase
SCNpilot_cont_300_bf_scaffold_428_curated_27
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26790..30044)
DNA (3255bp) protein (1085aa)
cation transporter n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BE9
Cation transporter {ECO:0000313|EMBL:ETI65152.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
heavy metal efflux pump CzcA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_300_bf_scaffold_428_curated_28
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30048..31208)
DNA (1161bp) protein (387aa)
metal transporter n=1 Tax=Sphingomonas wittichii RepID=UPI000319E781
Metal transporter {ECO:0000313|EMBL:KKC25598.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_300_bf_scaffold_428_curated_29
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31331..32596)
DNA (1266bp) protein (422aa)
Outer membrane efflux protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6INV8_9SPHN
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:CCA93110.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_428_curated_30
unknown

Not on your lists

comp(33016..33150)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying items 1-30 of 134 in total

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