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SCNpilot_cont_300_bf_scaffold_731_curated

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_731_curated_1
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(196..489)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI00034AACEF
LysR family transcriptional regulator {ECO:0000313|EMBL:EKN01386.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_731_curated_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1210..3063
DNA (1854bp) protein (618aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PSA2_9BRAD
SCNpilot_cont_300_bf_scaffold_731_curated_3
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3067..4689)
DNA (1623bp) protein (541aa)
Putative Ig domain-containing protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HRV6_9RHIZ
Putative Ig domain-containing protein {ECO:0000313|EMBL:EJN03643.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_731_curated_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5333..5821)
DNA (489bp) protein (163aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B58321
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:GAM02453.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_731_curated_5
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5845..6513
DNA (669bp) protein (223aa)
uracil-DNA glycosylase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002892E8C
Putative uracil-DNA glycosylase {ECO:0000313|EMBL:KFL47126.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
uracil-DNA glycosylase
SCNpilot_cont_300_bf_scaffold_731_curated_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6652..7530
DNA (879bp) protein (293aa)
glycosyl transferase family 2 n=1 Tax=Sphingomonas elodea RepID=UPI00026321A3
Putative glycosyltransferase {ECO:0000313|EMBL:GAL99707.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
glycosyl transferase family protein
SCNpilot_cont_300_bf_scaffold_731_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7527..8339
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C92E2
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29529.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K03478 hypothetical protein
SCNpilot_cont_300_bf_scaffold_731_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8346..8882
DNA (537bp) protein (179aa)
RNA polymerase sigma-70 factor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA5F9
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AIT05927.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_731_curated_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8875..9810
DNA (936bp) protein (312aa)
anti-FecI sigma factor FecR n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDFE
Uncharacterized protein {ECO:0000313|EMBL:AIT05926.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
anti-FecI sigma factor FecR
SCNpilot_cont_300_bf_scaffold_731_curated_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9878..12082
DNA (2205bp) protein (735aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289E6D4
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:EZP57475.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
TonB-dependent receptor, plug
SCNpilot_cont_300_bf_scaffold_731_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12076..13878)
DNA (1803bp) protein (601aa)
sdhA; succinate dehydrogenase/fumarate reductase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B70820
Fumarate reductase {ECO:0000313|EMBL:AJP73821.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_731_curated_12
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13878..14261)
DNA (384bp) protein (128aa)
succinate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4B0DC
Succinate dehydrogenase {ECO:0000313|EMBL:KHA63260.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
succinate dehydrogenase hydrophobic membrane anchor protein
SCNpilot_cont_300_bf_scaffold_731_curated_13
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14261..14608)
DNA (348bp) protein (116aa)
succinate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B36DD1
Succinate dehydrogenase {ECO:0000313|EMBL:KHA63259.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
succinate dehydrogenase cytochrome b556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_cont_300_bf_scaffold_731_curated_14
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14853..16202
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036457E8
Chemotaxis protein {ECO:0000313|EMBL:KHA63258.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
methyl-accepting chemotaxis sensory transducer
SCNpilot_cont_300_bf_scaffold_731_curated_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16247..17206
DNA (960bp) protein (320aa)
prmA; ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
ribose 1,5-bisphosphate phosphokinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3EEE4
Ribosomal protein L11 methyltransferase {ECO:0000313|EMBL:GAO39437.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_300_bf_scaffold_731_curated_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17309..18172)
DNA (864bp) protein (288aa)
phhA; phenylalanine 4-monooxygenase; K00500 phenylalanine-4-hydroxylase [EC:1.14.16.1]
phenylalanine-4-hydroxylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF39
Sphingomonas taxi strain 30a NODE_73, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27243.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_731_curated_17
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18238..18666)
DNA (429bp) protein (143aa)
peroxiredoxin n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7A800
Peroxiredoxin OsmC {ECO:0000313|EMBL:KHA62965.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
OsmC-like protein; K04063 osmotically inducible protein OsmC
SCNpilot_cont_300_bf_scaffold_731_curated_18
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18762..19070)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B41230
Uncharacterized protein {ECO:0000313|EMBL:GAM00145.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
17 kDa surface antigen
SCNpilot_cont_300_bf_scaffold_731_curated_19
unknown

Not on your lists

20008..20349
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_731_curated_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20501..21127
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000371C292
Uncharacterized protein {ECO:0000313|EMBL:AIT06479.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_731_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21135..21698)
DNA (564bp) protein (188aa)
acetyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B53C9E
Acetyltransferase {ECO:0000313|EMBL:AJP73804.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sortase-like acyltransferase
SCNpilot_cont_300_bf_scaffold_731_curated_22
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21760..22233)
DNA (474bp) protein (158aa)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EZP52628.1}; EC=2.3.1.128 {ECO:0000313|EMBL:EZP52628.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
acetyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4F7D3
ribosomal-protein-alanine acetyltransferase
SCNpilot_cont_300_bf_scaffold_731_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22230..22775)
DNA (546bp) protein (182aa)
peptidase M22 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B43BE2
Peptidase M22 {ECO:0000313|EMBL:AIT06287.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
peptidase M22, glycoprotease
SCNpilot_cont_300_bf_scaffold_731_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22846..23442)
DNA (597bp) protein (199aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase SR41_01900 {ECO:0000256|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_01204};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K00540 [EC:1.-.-.-]
malonic semialdehyde reductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4EC7B
SCNpilot_cont_300_bf_scaffold_731_curated_25
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23777..24247
DNA (471bp) protein (157aa)
Formate dehydrogenase family accessory protein FdhD n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6B9_SPHWW
formate dehydrogenase family accessory protein FdhD; K02379 FdhD protein
Protein FdhD homolog {ECO:0000256|SAAS:SAAS00093832}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_731_curated_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24244..24756
DNA (513bp) protein (171aa)
molybdenum cofactor guanylyltransferase; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WV80_9SPHN
MobA protein {ECO:0000313|EMBL:GAN12498.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_731_curated_27
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24878..26599)
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5A4C4
Uncharacterized protein {ECO:0000313|EMBL:ESQ88838.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_731_curated_28
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26672..27580)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036CADE8
Permease {ECO:0000313|EMBL:KHA63781.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
putative permease
SCNpilot_cont_300_bf_scaffold_731_curated_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


27814..29346
DNA (1533bp) protein (511aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
prolyl-tRNA synthetase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC016
SCNpilot_cont_300_bf_scaffold_731_curated_30
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29346..29729
DNA (384bp) protein (128aa)
Phenylacetic acid degradation-like protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBZ0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO39256.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
phenylacetic acid degradation-like protein
Displaying items 1-30 of 83 in total

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