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SCNpilot_cont_300_bf_scaffold_648_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_648_curated_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..901
DNA (900bp) protein (300aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
nrdB; ribonucleoside-diphosphate reductase beta chain (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Sphingomonas sp. S17 RepID=F3WTM3_9SPHN
SCNpilot_cont_300_bf_scaffold_648_curated_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1099..1524)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037E156A
Sphingomonas taxi strain 30a NODE_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26938.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
biopolymer transport protein ExbD
SCNpilot_cont_300_bf_scaffold_648_curated_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1630..1848
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037CEC43
Sphingomonas taxi strain 30a NODE_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26939.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_648_curated_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2056..2640)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037FB0E2
Opacity protein {ECO:0000313|EMBL:KHA63799.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_648_curated_5
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3023..3193)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G8P4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97016.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
3\'(2\'),5\'-bisphosphate nucleotidase
SCNpilot_cont_300_bf_scaffold_648_curated_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3303..4121
DNA (819bp) protein (273aa)
Uncharacterized protein {ECO:0000313|EMBL:KDX38553.1}; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
SCNpilot_cont_300_bf_scaffold_648_curated_7
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4133..4513
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036625B3
Uncharacterized protein {ECO:0000313|EMBL:GAO39702.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_300_bf_scaffold_648_curated_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4628..5965)
DNA (1338bp) protein (446aa)
cytochrome P450 family protein; K00517 [EC:1.14.-.-] rbh
Cytochrome P450 n=1 Tax=Caulobacter sp. AP07 RepID=J3AJ04_9CAUL
Cytochrome P450 {ECO:0000313|EMBL:EJL32546.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_648_curated_9
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5977..7047)
DNA (1071bp) protein (357aa)
Threonine dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAG0_PHEZH
threonine dehydrogenase
Threonine dehydrogenase {ECO:0000313|EMBL:ACG77967.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_648_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7044..8255)
DNA (1212bp) protein (404aa)
luciferase family protein; K14733 limonene 1,2-monooxygenase [EC:1.14.13.107]
Luciferase family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTN2_PARL1
Luciferase family protein {ECO:0000313|EMBL:ABS63265.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_648_curated_11

Not on your lists

comp(8460..8876)
DNA (417bp) protein (139aa)
cytochrome C biogenesis protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D7508C
Putative cytochrome c-type biogenesis protein {ECO:0000313|EMBL:CCO21915.1}; TaxID=433724 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="termite gut metagenome.;"
cytochrome C biogenesis protein
SCNpilot_cont_300_bf_scaffold_648_curated_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8873..9400)
DNA (528bp) protein (176aa)
alkyl hydroperoxide reductase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA1D8
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29153.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
periplasmic protein thiol--disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
SCNpilot_cont_300_bf_scaffold_648_curated_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9397..11334)
DNA (1938bp) protein (646aa)
cytochrome C assembly protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000289CDDA
Cytochrome C biogenesis protein CcmF {ECO:0000313|EMBL:AIT05688.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome c assembly protein
SCNpilot_cont_300_bf_scaffold_648_curated_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11646..12131)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003811C6B
Uncharacterized protein {ECO:0000313|EMBL:GAL99609.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_648_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12267..12833
DNA (567bp) protein (189aa)
Para-aminobenzoate synthase {ECO:0000313|EMBL:AJP72020.1}; EC=2.6.1.85 {ECO:0000313|EMBL:AJP72020.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glutamine amidotransferase of anthranilate synthase (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27]
para-aminobenzoate synthase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF70
SCNpilot_cont_300_bf_scaffold_648_curated_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12830..13819
DNA (990bp) protein (330aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
trpD; anthranilate phosphoribosyltransferase; K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18]
anthranilate phosphoribosyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375D641
SCNpilot_cont_300_bf_scaffold_648_curated_17
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13816..14595
DNA (780bp) protein (260aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
trpC; indole-3-glycerol-phosphate synthase (EC:4.1.1.48)
indole-3-glycerol-phosphate synthase n=1 Tax=Sphingomonas melonis RepID=UPI0003757B6A
SCNpilot_cont_300_bf_scaffold_648_curated_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14592..15074
DNA (483bp) protein (161aa)
molybdenum cofactor biosynthesis protein MoaC n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E3F72
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
molybdenum cofactor biosynthesis protein C
SCNpilot_cont_300_bf_scaffold_648_curated_19
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15265..16023
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B400AF
Uncharacterized protein {ECO:0000313|EMBL:KKC26112.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_648_curated_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16074..16520)
DNA (447bp) protein (149aa)
Redoxin family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYN3_9SPHN
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AIT07032.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
alkyl hydroperoxide reductase
SCNpilot_cont_300_bf_scaffold_648_curated_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16513..19191)
DNA (2679bp) protein (893aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glutamate-ammonia ligase adenylyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B71608
glutamate-ammonia-ligase adenylyltransferase
SCNpilot_cont_300_bf_scaffold_648_curated_22
unknown

Not on your lists

19245..19412
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_648_curated_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19501..20217)
DNA (717bp) protein (239aa)
RNA polymerase sigma 70 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B446E6
RNA polymerase sigma 70 {ECO:0000313|EMBL:AJP72032.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_648_curated_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20441..21235)
DNA (795bp) protein (265aa)
Sigma-70, region 4 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYM8_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12314.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
CheY-like response regulator
SCNpilot_cont_300_bf_scaffold_648_curated_25
Sphingomonas sp. Fr1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21486..21650
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037BB836
NepR {ECO:0000313|EMBL:AET62590.1}; TaxID=907061 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Fr1.;"
SCNpilot_cont_300_bf_scaffold_648_curated_26
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21750..23255
DNA (1506bp) protein (502aa)
histidine kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B52706
Histidine kinase {ECO:0000313|EMBL:KHA64419.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
putative signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_648_curated_27
unknown

Not on your lists

23493..23618
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_648_curated_28
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23622..24398)
DNA (777bp) protein (259aa)
preprotein translocase subunit TatC n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003808791
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_648_curated_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24395..24796)
DNA (402bp) protein (134aa)
translocase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B39E99
Sphingomonas taxi strain 30a NODE_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26950.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
twin-arginine translocation protein subunit TatB; K03117 sec-independent protein translocase protein TatB
SCNpilot_cont_300_bf_scaffold_648_curated_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24854..25087)
DNA (234bp) protein (78aa)
Sec-independent protein translocase protein TatA n=1 Tax=Sphingomonas sp. S17 RepID=F3WYM2_9SPHN
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Sec-independent protein translocase protein tatA/E-like protein; K03116 sec-independent protein translocase protein TatA
Displaying items 1-30 of 38 in total

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