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SCNpilot_cont_300_bf_scaffold_1176_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1176_curated_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..535
DNA (534bp) protein (178aa)
Two-component system sensor protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NEQ4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55566.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
fecR; Fe2+-dicitrate sensor membrane component; K07165 transmembrane sensor
SCNpilot_cont_300_bf_scaffold_1176_curated_2
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1731..3491
DNA (1761bp) protein (587aa)
TonB-dependent receptor n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9D4_CAUSK
TonB-dependent receptor {ECO:0000313|EMBL:KEQ53307.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_1176_curated_3
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3488..5503
DNA (2016bp) protein (672aa)
Prolyl oligopeptidase family protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H410_9CAUL
Putative peptidase {ECO:0000313|EMBL:KEQ53306.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein
SCNpilot_cont_300_bf_scaffold_1176_curated_4
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5495..7234)
DNA (1740bp) protein (580aa)
asparagine synthase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=Caulobacter sp. AP07 RepID=J3AUC5_9CAUL
Asparagine synthase {ECO:0000313|EMBL:KEQ53305.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCNpilot_cont_300_bf_scaffold_1176_curated_5
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7231..7893)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4NUM9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KEQ53304.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1176_curated_6
unknown

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comp(7942..8070)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1176_curated_7
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8191..8793)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IFJ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB08409.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1176_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8790..9683)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJU3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67301.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_1176_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9673..10287)
DNA (615bp) protein (205aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
N-acyl-L-homoserine lactone synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJU2_9SPHN
N-acyl-L-homoserine lactone synthase
SCNpilot_cont_300_bf_scaffold_1176_curated_10
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10368..11129)
DNA (762bp) protein (254aa)
LuxR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJU1_9SPHN
LuxR family transcriptional regulator {ECO:0000313|EMBL:KEQ53292.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1176_curated_11
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11440..12120
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002FB8DF1
Uncharacterized protein {ECO:0000313|EMBL:KEQ53291.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1176_curated_12
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12509..13690)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3F02E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB78237.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_cont_300_bf_scaffold_1176_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13979..14671
DNA (693bp) protein (231aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN23_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65471.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_1176_curated_14

Not on your lists

14798..15991
DNA (1194bp) protein (398aa)
Major facilitator family transporter n=1 Tax=uncultured bacterium A1Q1_fos_2140 RepID=L7VXS8_9BACT
Major facilitator family transporter {ECO:0000313|EMBL:AGC71858.1}; TaxID=1256565 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_2140.;"
major facilitator transporter
SCNpilot_cont_300_bf_scaffold_1176_curated_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16089..16682
DNA (594bp) protein (198aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=T0GCA5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49928.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1176_curated_16
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16812..17006
DNA (195bp) protein (65aa)
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8]
Thioredoxin n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTF3_9SPHN
Thioredoxin {ECO:0000313|EMBL:CCW20251.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Displaying 16 items

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