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SCNpilot_cont_300_bf_scaffold_5670_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5670_curated_1
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(81..551)
DNA (471bp) protein (157aa)
Transcriptional regulator, AsnC family n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWL4_SPHCR
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KEQ55334.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
AsnC family transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_5670_curated_2
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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670..930
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000371BC3A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG48985.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_5670_curated_3
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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927..1955
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD62E
Putative membrane protein {ECO:0000313|EMBL:KEQ55336.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5670_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2092..3171)
DNA (1080bp) protein (360aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
branched-chain amino acid aminotransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B534CA
SCNpilot_cont_300_bf_scaffold_5670_curated_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3240..3740
DNA (501bp) protein (167aa)
MarR family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B731FE
DNA, contig: SP612 {ECO:0000313|EMBL:GAN12741.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
MarR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_5670_curated_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3871..4377)
DNA (507bp) protein (169aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000382B57D
pyrroline-5-carboxylate reductase
SCNpilot_cont_300_bf_scaffold_5670_curated_7
unknown

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comp(4371..4607)
DNA (237bp) protein (79aa)
pyrroline-5-carboxylate reductase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028889CC
SCNpilot_cont_300_bf_scaffold_5670_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4607..5116)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003790319
Uncharacterized protein {ECO:0000313|EMBL:AIT05370.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5670_curated_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5334..5585)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7AF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50600.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_5670_curated_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5609..6163)
DNA (555bp) protein (185aa)
TspO/MBR family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVW6_9SPHN
DNA, contig: SP612 {ECO:0000313|EMBL:GAN12737.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
benzodiazepine receptor; K07185 tryptophan-rich sensory protein
SCNpilot_cont_300_bf_scaffold_5670_curated_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6319..7053)
DNA (735bp) protein (245aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
hemolysin n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4FD13
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30170.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_5670_curated_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7222..7893
DNA (672bp) protein (224aa)
esterase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5D03D
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30169.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5670_curated_13
unknown

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comp(7872..8015)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5670_curated_14
unknown

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comp(8012..8107)
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 14 items

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