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SCNpilot_cont_300_bf_scaffold_1609_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1609_curated_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1408
DNA (1407bp) protein (469aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI00037EBF85
Uncharacterized protein {ECO:0000313|EMBL:AHE52130.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_300_bf_scaffold_1609_curated_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1671..1955)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W5L4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14991.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_3
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1948..2313)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VW96_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14990.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2577..3683)
DNA (1107bp) protein (369aa)
UPI0003D65806 related cluster n=1 Tax=unknown RepID=UPI0003D65806
Transposase {ECO:0000313|EMBL:AJP72451.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphoglycerate mutase family protein
SCNpilot_cont_300_bf_scaffold_1609_curated_5
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3690..3968)
DNA (279bp) protein (93aa)
Uncharacterized protein n=3 Tax=Sphingobium RepID=K4I159_SPHSA
Uncharacterized protein {ECO:0000313|EMBL:EQB32611.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_6
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3965..4390)
DNA (426bp) protein (142aa)
Uncharacterized protein n=3 Tax=Sphingobium RepID=T0HZU5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR18480.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_7
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4866..5168
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D031_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72332.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
Hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_8
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5203..5487
DNA (285bp) protein (95aa)
Transcription elongation protein SprT n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J6J2_9SPHN
Transcription elongation protein SprT {ECO:0000313|EMBL:EQB17584.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
Hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_9
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5977..6258)
DNA (282bp) protein (94aa)
Uncharacterized protein n=6 Tax=Sphingomonadaceae RepID=D4Z9A1_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPR17828.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_cont_300_bf_scaffold_1609_curated_10
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6239..6448)
DNA (210bp) protein (70aa)
Phage-related protein n=4 Tax=Sphingomonadaceae RepID=D4Z9A0_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPR17844.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_cont_300_bf_scaffold_1609_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6893..7759
DNA (867bp) protein (289aa)
Putative transposase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YBX6_9SPHN
Putative transposase {ECO:0000313|EMBL:GAD51046.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
transposase
SCNpilot_cont_300_bf_scaffold_1609_curated_12
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7902..8375
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HDM1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB10218.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase Tn3 family protein
SCNpilot_cont_300_bf_scaffold_1609_curated_13
Sphingobium fuliginis, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8537..9148
DNA (612bp) protein (204aa)
phosphopantetheine--protein transferase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003611A8C
parA; partitioning protein ParA; K03496 chromosome partitioning protein
Partitioning protein {ECO:0000313|EMBL:AFU63357.1}; TaxID=1208342 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium fuliginis ATCC 27551.;"
SCNpilot_cont_300_bf_scaffold_1609_curated_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9148..9432
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003623514
Uncharacterized protein {ECO:0000313|EMBL:EKU72373.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_15
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9461..10399)
DNA (939bp) protein (313aa)
Plasmid replication initiator protein RepA n=7 Tax=Alphaproteobacteria RepID=D4Z995_SPHJU
Replication protein
Plasmid replication initiator RepA {ECO:0000313|EMBL:EQB29887.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_cont_300_bf_scaffold_1609_curated_16
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11486..11917)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003710A54
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIM67458.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_cont_300_bf_scaffold_1609_curated_17
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11997..13661)
DNA (1665bp) protein (555aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IZ99_9SPHN
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQB29882.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
conjugal transfer protein TraG
SCNpilot_cont_300_bf_scaffold_1609_curated_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13661..14575)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D465_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72345.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
putative nucleotidyltransferase
SCNpilot_cont_300_bf_scaffold_1609_curated_19
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14578..14832)
DNA (255bp) protein (85aa)
Uncharacterized protein n=4 Tax=Sphingobium RepID=D4Z9D1_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPR08636.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_cont_300_bf_scaffold_1609_curated_20
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14825..15061)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CKI8_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72348.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
traD; conjugal transfer protein TraD
SCNpilot_cont_300_bf_scaffold_1609_curated_21
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15099..15401)
DNA (303bp) protein (101aa)
Uncharacterized protein n=4 Tax=Sphingomonadaceae RepID=M4SNI4_9SPHN
hypothetical protein
Conjugal transfer protein TraD {ECO:0000313|EMBL:EQB32640.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_cont_300_bf_scaffold_1609_curated_22
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15572..18478
DNA (2907bp) protein (969aa)
UPI0003D63E88 related cluster n=1 Tax=unknown RepID=UPI0003D63E88
Conjugal transfer protein TrbA {ECO:0000313|EMBL:ETI62676.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
conjugal transfer relaxase TraA
SCNpilot_cont_300_bf_scaffold_1609_curated_23
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18539..18784
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI000362AAE1
Uncharacterized protein {ECO:0000313|EMBL:EPR13944.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1609_curated_24
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18788..19222
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI000365621F
Uncharacterized protein {ECO:0000313|EMBL:EPR13943.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
PilT protein domain-containing protein
SCNpilot_cont_300_bf_scaffold_1609_curated_25
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19219..19938
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J6I1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB17569.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
Displaying 25 items

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