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SCNpilot_cont_300_bf_scaffold_1510_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1510_curated_1
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..415
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035EA0A8
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EHP92744.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
Crp/Fnr family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1510_curated_2
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(422..1372)
DNA (951bp) protein (317aa)
UPI0003D69ACB related cluster n=1 Tax=unknown RepID=UPI0003D69ACB
Cation transporter {ECO:0000313|EMBL:ETI62642.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
cation diffusion facilitator family transporter
SCNpilot_cont_300_bf_scaffold_1510_curated_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1540..2058
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B63868
Uncharacterized protein {ECO:0000313|EMBL:GAL99436.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1510_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2091..2978
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036BA795
Sphingomonas taxi strain 30a NODE_26, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29845.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1510_curated_5
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3002..3298
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU60_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14185.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1510_curated_6
Ruegeria sp. TM1040, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3336..3734)
DNA (399bp) protein (133aa)
Transcriptional regulator, LysR family n=1 Tax=Ruegeria sp. (strain TM1040) RepID=Q1GH77_RUEST
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABF63989.1}; TaxID=292414 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. (strain TM1040) (Silicibacter sp.).;"
SCNpilot_cont_300_bf_scaffold_1510_curated_7
Halomonas huangheensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3731..4237)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AEF451
Uncharacterized protein {ECO:0000313|EMBL:ERL51413.1}; TaxID=1178482 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas huangheensis.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1510_curated_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4495..6072
DNA (1578bp) protein (526aa)
Aldehyde dehydrogenase protein {ECO:0000313|EMBL:CCD03765.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CCD03765.1};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Aldehyde dehydrogenase protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0Q6_AZOBR
aldehyde dehydrogenase protein
SCNpilot_cont_300_bf_scaffold_1510_curated_9
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6092..8530)
DNA (2439bp) protein (813aa)
lig; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036874CA
DNA ligase D {ECO:0000313|EMBL:EIM68887.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_cont_300_bf_scaffold_1510_curated_10
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8532..9401)
DNA (870bp) protein (290aa)
Ku family containing protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036C7DD9
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
Ku family containing protein
SCNpilot_cont_300_bf_scaffold_1510_curated_11
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10824..11438
DNA (615bp) protein (205aa)
Putative inosine-5`-monophosphate dehydrogenase protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EVN4_9RHIZ
Inosine-5-monophosphate dehydrogenase {ECO:0000313|EMBL:AJR26853.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1510_curated_12
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11440..12054
DNA (615bp) protein (205aa)
Putative outer membrane protein n=1 Tax=Sphingobium sp. AP49 RepID=J2L4Q9_9SPHN
Putative outer membrane protein {ECO:0000313|EMBL:EJK82366.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein; K08995 putative membrane protein
SCNpilot_cont_300_bf_scaffold_1510_curated_13
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12254..12706
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0H1B7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05888.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1510_curated_14
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12721..13455
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GYW9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05887.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein; K02351 putative membrane protein
SCNpilot_cont_300_bf_scaffold_1510_curated_15
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13452..14402
DNA (951bp) protein (317aa)
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GPT5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05886.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_cont_300_bf_scaffold_1510_curated_16
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14399..16339
DNA (1941bp) protein (647aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I2L4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05885.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_cont_300_bf_scaffold_1510_curated_17
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16332..16943
DNA (612bp) protein (204aa)
cyoB; cytochrome c oxidase subunit 1; K15408 cytochrome c oxidase subunit I+III [EC:1.9.3.1]
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I8F4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05884.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_cont_300_bf_scaffold_1510_curated_18
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16940..17302
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GYW6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05882.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_cont_300_bf_scaffold_1510_curated_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17290..17628
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GPT3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05881.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
cytochrome c class I
SCNpilot_cont_300_bf_scaffold_1510_curated_20
unknown

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comp(17601..17786)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1510_curated_21
unknown

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17972..18070
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1510_curated_22
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18121..18603
DNA (483bp) protein (161aa)
YbaK/prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2A0_9SPHN
YbaK/prolyl-tRNA synthetase associated domain-containing protein
YbaK/prolyl-tRNA synthetase associated domain-containing protein {ECO:0000313|EMBL:AGH48609.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1510_curated_23
unknown

Not on your lists

18600..18725
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1510_curated_24
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18730..20514)
DNA (1785bp) protein (595aa)
hypothetical protein; K00156 pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF9A
Thiamine pyrophosphate protein {ECO:0000313|EMBL:KEQ55152.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCNpilot_cont_300_bf_scaffold_1510_curated_25
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20754..21146
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DXF2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU83307.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
cytochrome c protein, class I
SCNpilot_cont_300_bf_scaffold_1510_curated_26
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21154..21699
DNA (546bp) protein (182aa)
Cytochrome C family protein, di-heme cytochrome C (Class I) n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EAE0_METSZ
Cytochrome C family protein, di-heme cytochrome C (Class I) {ECO:0000313|EMBL:CCD31945.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
cytochrome c class I
SCNpilot_cont_300_bf_scaffold_1510_curated_27
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21696..22100)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035EA0A8
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EHP92744.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
Crp/Fnr family transcriptional regulator
Displaying 27 items

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